Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11430

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11420 and ABZR87_RS11425 are separated by 40 nucleotidesABZR87_RS11425 and ABZR87_RS11430 are separated by 126 nucleotidesABZR87_RS11430 and ABZR87_RS11435 are separated by 4 nucleotidesABZR87_RS11435 and ABZR87_RS11440 are separated by 296 nucleotides ABZR87_RS11420: ABZR87_RS11420 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 2,420,382 to 2,421,542 _RS11420 ABZR87_RS11425: ABZR87_RS11425 - SMR family transporter, at 2,421,583 to 2,421,954 _RS11425 ABZR87_RS11430: ABZR87_RS11430 - glycosyltransferase family 39 protein, at 2,422,081 to 2,423,751 _RS11430 ABZR87_RS11435: ABZR87_RS11435 - Mth938-like domain-containing protein, at 2,423,756 to 2,424,136 _RS11435 ABZR87_RS11440: ABZR87_RS11440 - pyridoxal phosphate-dependent aminotransferase, at 2,424,433 to 2,425,674 _RS11440 Position (kb) 2422 2423 2424Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2421.098 kb on - strand, within ABZR87_RS11420at 2421.098 kb on - strand, within ABZR87_RS11420at 2421.098 kb on - strand, within ABZR87_RS11420at 2421.386 kb on - strand, within ABZR87_RS11420at 2421.386 kb on - strand, within ABZR87_RS11420at 2421.996 kb on - strandat 2422.082 kb on + strandat 2422.082 kb on + strandat 2422.083 kb on + strandat 2422.083 kb on - strandat 2422.083 kb on - strandat 2422.083 kb on - strandat 2422.755 kb on - strand, within ABZR87_RS11430at 2423.497 kb on - strand, within ABZR87_RS11430at 2423.808 kb on - strand, within ABZR87_RS11435at 2423.808 kb on - strand, within ABZR87_RS11435at 2423.818 kb on - strand, within ABZR87_RS11435at 2423.818 kb on - strand, within ABZR87_RS11435at 2423.818 kb on - strand, within ABZR87_RS11435at 2424.071 kb on - strand, within ABZR87_RS11435at 2424.073 kb on - strand, within ABZR87_RS11435at 2424.073 kb on - strand, within ABZR87_RS11435at 2424.073 kb on - strand, within ABZR87_RS11435at 2424.073 kb on - strand, within ABZR87_RS11435at 2424.098 kb on - strand, within ABZR87_RS11435at 2424.098 kb on - strand, within ABZR87_RS11435at 2424.258 kb on + strandat 2424.259 kb on - strandat 2424.272 kb on - strandat 2424.305 kb on - strandat 2424.325 kb on + strandat 2424.325 kb on + strandat 2424.326 kb on - strandat 2424.326 kb on - strandat 2424.475 kb on + strandat 2424.475 kb on + strandat 2424.475 kb on + strandat 2424.475 kb on + strandat 2424.683 kb on - strand, within ABZR87_RS11440at 2424.727 kb on + strand, within ABZR87_RS11440at 2424.727 kb on + strand, within ABZR87_RS11440at 2424.727 kb on + strand, within ABZR87_RS11440at 2424.727 kb on + strand, within ABZR87_RS11440at 2424.727 kb on + strand, within ABZR87_RS11440

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,421,098 - ABZR87_RS11420 0.62 +0.2
2,421,098 - ABZR87_RS11420 0.62 +1.7
2,421,098 - ABZR87_RS11420 0.62 +0.1
2,421,386 - ABZR87_RS11420 0.86 -0.0
2,421,386 - ABZR87_RS11420 0.86 +2.4
2,421,996 - +0.0
2,422,082 + -0.5
2,422,082 + +0.4
2,422,083 + -1.1
2,422,083 - -0.0
2,422,083 - -0.1
2,422,083 - +0.4
2,422,755 - ABZR87_RS11430 0.40 -1.9
2,423,497 - ABZR87_RS11430 0.85 +0.2
2,423,808 - ABZR87_RS11435 0.14 -0.4
2,423,808 - ABZR87_RS11435 0.14 +0.2
2,423,818 - ABZR87_RS11435 0.16 -0.5
2,423,818 - ABZR87_RS11435 0.16 -1.8
2,423,818 - ABZR87_RS11435 0.16 -1.5
2,424,071 - ABZR87_RS11435 0.83 -1.4
2,424,073 - ABZR87_RS11435 0.83 -0.0
2,424,073 - ABZR87_RS11435 0.83 -1.5
2,424,073 - ABZR87_RS11435 0.83 -1.9
2,424,073 - ABZR87_RS11435 0.83 -0.5
2,424,098 - ABZR87_RS11435 0.90 -0.6
2,424,098 - ABZR87_RS11435 0.90 -1.2
2,424,258 + -1.6
2,424,259 - -1.2
2,424,272 - -1.8
2,424,305 - -0.4
2,424,325 + -0.1
2,424,325 + +0.4
2,424,326 - -1.4
2,424,326 - -0.6
2,424,475 + -3.4
2,424,475 + +0.2
2,424,475 + -2.4
2,424,475 + -1.7
2,424,683 - ABZR87_RS11440 0.20 -1.2
2,424,727 + ABZR87_RS11440 0.24 -1.0
2,424,727 + ABZR87_RS11440 0.24 -1.9
2,424,727 + ABZR87_RS11440 0.24 -3.5
2,424,727 + ABZR87_RS11440 0.24 -2.4
2,424,727 + ABZR87_RS11440 0.24 -2.8

Or see this region's nucleotide sequence