Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00225

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00220 and ABZR87_RS00225 are separated by 41 nucleotidesABZR87_RS00225 and ABZR87_RS00230 are separated by 21 nucleotidesABZR87_RS00230 and ABZR87_RS00235 are separated by 66 nucleotides ABZR87_RS00220: ABZR87_RS00220 - CysB family HTH-type transcriptional regulator, at 43,486 to 44,427 _RS00220 ABZR87_RS00225: ABZR87_RS00225 - ABC transporter substrate-binding protein, at 44,469 to 45,638 _RS00225 ABZR87_RS00230: ABZR87_RS00230 - NAD(P)-dependent oxidoreductase, at 45,660 to 46,544 _RS00230 ABZR87_RS00235: ABZR87_RS00235 - tRNA-Leu, at 46,611 to 46,695 _RS00235 Position (kb) 44 45 46Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 43.470 kb on + strandat 43.470 kb on + strandat 43.471 kb on - strandat 43.471 kb on - strandat 43.566 kb on + strandat 43.587 kb on + strand, within ABZR87_RS00220at 43.587 kb on + strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.744 kb on + strand, within ABZR87_RS00220at 43.744 kb on + strand, within ABZR87_RS00220at 43.744 kb on + strand, within ABZR87_RS00220at 43.744 kb on + strand, within ABZR87_RS00220at 43.840 kb on + strand, within ABZR87_RS00220at 43.840 kb on + strand, within ABZR87_RS00220at 43.841 kb on - strand, within ABZR87_RS00220at 43.841 kb on - strand, within ABZR87_RS00220at 43.841 kb on - strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.075 kb on - strand, within ABZR87_RS00220at 44.075 kb on - strand, within ABZR87_RS00220at 44.182 kb on + strand, within ABZR87_RS00220at 44.182 kb on + strand, within ABZR87_RS00220at 44.182 kb on + strand, within ABZR87_RS00220at 44.183 kb on - strand, within ABZR87_RS00220at 44.183 kb on - strand, within ABZR87_RS00220at 44.183 kb on - strand, within ABZR87_RS00220at 44.320 kb on + strand, within ABZR87_RS00220at 44.320 kb on + strand, within ABZR87_RS00220at 44.320 kb on + strand, within ABZR87_RS00220at 44.339 kb on - strandat 44.339 kb on - strandat 44.339 kb on - strandat 44.339 kb on - strandat 44.417 kb on - strandat 44.819 kb on + strand, within ABZR87_RS00225at 44.819 kb on + strand, within ABZR87_RS00225at 44.969 kb on + strand, within ABZR87_RS00225at 44.969 kb on + strand, within ABZR87_RS00225at 44.969 kb on + strand, within ABZR87_RS00225at 44.979 kb on + strand, within ABZR87_RS00225at 44.980 kb on - strand, within ABZR87_RS00225at 45.183 kb on + strand, within ABZR87_RS00225at 45.184 kb on - strand, within ABZR87_RS00225at 45.199 kb on - strand, within ABZR87_RS00225at 45.199 kb on - strand, within ABZR87_RS00225at 45.260 kb on + strand, within ABZR87_RS00225at 45.260 kb on + strand, within ABZR87_RS00225at 45.260 kb on + strand, within ABZR87_RS00225at 45.260 kb on + strand, within ABZR87_RS00225at 45.260 kb on + strand, within ABZR87_RS00225at 45.261 kb on - strand, within ABZR87_RS00225at 45.261 kb on - strand, within ABZR87_RS00225at 45.261 kb on - strand, within ABZR87_RS00225at 45.261 kb on - strand, within ABZR87_RS00225at 45.261 kb on - strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.364 kb on - strand, within ABZR87_RS00225at 45.364 kb on - strand, within ABZR87_RS00225at 45.622 kb on - strandat 45.622 kb on - strandat 45.747 kb on + strandat 45.747 kb on + strandat 45.747 kb on + strandat 45.747 kb on + strandat 45.747 kb on + strandat 45.748 kb on - strandat 45.748 kb on - strandat 46.248 kb on - strand, within ABZR87_RS00230at 46.390 kb on + strand, within ABZR87_RS00230at 46.457 kb on + strandat 46.457 kb on + strandat 46.458 kb on - strandat 46.483 kb on - strandat 46.588 kb on + strandat 46.588 kb on + strandat 46.588 kb on + strandat 46.588 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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43,470 + -1.0
43,470 + +0.1
43,471 - -0.3
43,471 - +0.7
43,566 + -4.1
43,587 + ABZR87_RS00220 0.11 -2.9
43,587 + ABZR87_RS00220 0.11 -2.1
43,588 - ABZR87_RS00220 0.11 -2.3
43,588 - ABZR87_RS00220 0.11 -3.4
43,588 - ABZR87_RS00220 0.11 -1.0
43,588 - ABZR87_RS00220 0.11 -2.4
43,588 - ABZR87_RS00220 0.11 -1.4
43,588 - ABZR87_RS00220 0.11 -1.7
43,588 - ABZR87_RS00220 0.11 -2.9
43,744 + ABZR87_RS00220 0.27 -1.8
43,744 + ABZR87_RS00220 0.27 -3.2
43,744 + ABZR87_RS00220 0.27 -4.1
43,744 + ABZR87_RS00220 0.27 -1.2
43,840 + ABZR87_RS00220 0.38 -1.4
43,840 + ABZR87_RS00220 0.38 -2.1
43,841 - ABZR87_RS00220 0.38 -4.0
43,841 - ABZR87_RS00220 0.38 -1.7
43,841 - ABZR87_RS00220 0.38 -4.3
44,074 + ABZR87_RS00220 0.62 -3.0
44,074 + ABZR87_RS00220 0.62 -2.4
44,074 + ABZR87_RS00220 0.62 -3.2
44,074 + ABZR87_RS00220 0.62 -1.5
44,074 + ABZR87_RS00220 0.62 -4.0
44,074 + ABZR87_RS00220 0.62 -2.9
44,074 + ABZR87_RS00220 0.62 -3.8
44,074 + ABZR87_RS00220 0.62 -3.2
44,074 + ABZR87_RS00220 0.62 -3.9
44,074 + ABZR87_RS00220 0.62 -3.1
44,075 - ABZR87_RS00220 0.63 -4.7
44,075 - ABZR87_RS00220 0.63 -0.4
44,182 + ABZR87_RS00220 0.74 -3.3
44,182 + ABZR87_RS00220 0.74 -4.0
44,182 + ABZR87_RS00220 0.74 -3.1
44,183 - ABZR87_RS00220 0.74 -2.2
44,183 - ABZR87_RS00220 0.74 -3.5
44,183 - ABZR87_RS00220 0.74 -5.4
44,320 + ABZR87_RS00220 0.89 -3.9
44,320 + ABZR87_RS00220 0.89 -2.6
44,320 + ABZR87_RS00220 0.89 -1.3
44,339 - +1.4
44,339 - -2.2
44,339 - -2.2
44,339 - -1.9
44,417 - +0.2
44,819 + ABZR87_RS00225 0.30 -0.6
44,819 + ABZR87_RS00225 0.30 +0.1
44,969 + ABZR87_RS00225 0.43 -0.0
44,969 + ABZR87_RS00225 0.43 -0.5
44,969 + ABZR87_RS00225 0.43 -0.4
44,979 + ABZR87_RS00225 0.44 +0.5
44,980 - ABZR87_RS00225 0.44 +0.7
45,183 + ABZR87_RS00225 0.61 +0.8
45,184 - ABZR87_RS00225 0.61 -0.0
45,199 - ABZR87_RS00225 0.62 +0.2
45,199 - ABZR87_RS00225 0.62 +0.2
45,260 + ABZR87_RS00225 0.68 -0.2
45,260 + ABZR87_RS00225 0.68 +0.4
45,260 + ABZR87_RS00225 0.68 -0.1
45,260 + ABZR87_RS00225 0.68 -0.2
45,260 + ABZR87_RS00225 0.68 +0.9
45,261 - ABZR87_RS00225 0.68 -0.3
45,261 - ABZR87_RS00225 0.68 -0.5
45,261 - ABZR87_RS00225 0.68 -0.4
45,261 - ABZR87_RS00225 0.68 +0.4
45,261 - ABZR87_RS00225 0.68 -1.2
45,359 + ABZR87_RS00225 0.76 -0.9
45,359 + ABZR87_RS00225 0.76 -0.1
45,359 + ABZR87_RS00225 0.76 +0.1
45,359 + ABZR87_RS00225 0.76 +1.4
45,359 + ABZR87_RS00225 0.76 -0.1
45,359 + ABZR87_RS00225 0.76 -1.4
45,359 + ABZR87_RS00225 0.76 -0.2
45,359 + ABZR87_RS00225 0.76 +0.1
45,360 - ABZR87_RS00225 0.76 -0.3
45,360 - ABZR87_RS00225 0.76 +1.5
45,360 - ABZR87_RS00225 0.76 +0.4
45,360 - ABZR87_RS00225 0.76 -0.0
45,360 - ABZR87_RS00225 0.76 +0.0
45,360 - ABZR87_RS00225 0.76 +0.7
45,360 - ABZR87_RS00225 0.76 +1.2
45,360 - ABZR87_RS00225 0.76 +1.4
45,360 - ABZR87_RS00225 0.76 -0.4
45,360 - ABZR87_RS00225 0.76 +0.4
45,364 - ABZR87_RS00225 0.76 -0.3
45,364 - ABZR87_RS00225 0.76 +0.9
45,622 - -0.9
45,622 - +0.5
45,747 + +0.5
45,747 + -0.1
45,747 + +0.4
45,747 + -0.0
45,747 + +0.3
45,748 - -0.2
45,748 - +0.0
46,248 - ABZR87_RS00230 0.66 -0.8
46,390 + ABZR87_RS00230 0.82 +0.2
46,457 + -0.5
46,457 + +0.8
46,458 - +0.1
46,483 - +0.0
46,588 + +0.9
46,588 + +0.4
46,588 + -0.3
46,588 + +0.0

Or see this region's nucleotide sequence