Strain Fitness in Sinorhizobium meliloti 1021 around SMc03199

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03198 and SMc03199 are separated by 12 nucleotidesSMc03199 and SMc03200 are separated by 38 nucleotides SMc03198: SMc03198 - molybdenum ABC transporter ATP-binding protein, at 3,161,583 to 3,162,656 SMc03198 SMc03199: SMc03199 - molybdenum transporter, at 3,162,669 to 3,163,196 SMc03199 SMc03200: SMc03200 - amino acid deaminase transmembrane protein, at 3,163,235 to 3,164,572 SMc03200 Position (kb) 3162 3163 3164Strain fitness (log2 ratio) -1 0 1at 3161.820 kb on + strand, within SMc03198at 3161.877 kb on + strand, within SMc03198at 3161.878 kb on - strand, within SMc03198at 3161.878 kb on - strand, within SMc03198at 3162.102 kb on + strand, within SMc03198at 3162.103 kb on - strand, within SMc03198at 3162.144 kb on + strand, within SMc03198at 3162.144 kb on + strand, within SMc03198at 3162.144 kb on + strandat 3162.144 kb on + strand, within SMc03198at 3162.145 kb on - strand, within SMc03198at 3162.145 kb on - strand, within SMc03198at 3162.347 kb on - strand, within SMc03198at 3162.414 kb on + strand, within SMc03198at 3162.414 kb on + strand, within SMc03198at 3162.539 kb on - strand, within SMc03198at 3162.539 kb on - strand, within SMc03198at 3162.671 kb on - strandat 3162.879 kb on - strand, within SMc03199at 3162.879 kb on - strand, within SMc03199at 3162.901 kb on - strand, within SMc03199at 3162.923 kb on + strand, within SMc03199at 3162.923 kb on + strand, within SMc03199at 3162.924 kb on - strand, within SMc03199at 3162.924 kb on - strand, within SMc03199at 3163.075 kb on + strand, within SMc03199at 3163.076 kb on - strand, within SMc03199at 3163.076 kb on - strand, within SMc03199at 3163.076 kb on - strand, within SMc03199at 3163.076 kb on - strand, within SMc03199at 3163.210 kb on - strandat 3163.321 kb on + strandat 3163.550 kb on + strand, within SMc03200at 3163.551 kb on - strand, within SMc03200at 3163.552 kb on + strand, within SMc03200at 3163.553 kb on - strand, within SMc03200at 3163.697 kb on + strand, within SMc03200at 3163.698 kb on - strand, within SMc03200at 3163.699 kb on + strand, within SMc03200at 3163.700 kb on - strand, within SMc03200at 3164.012 kb on + strand, within SMc03200at 3164.012 kb on + strand, within SMc03200at 3164.012 kb on + strand, within SMc03200at 3164.013 kb on - strand, within SMc03200at 3164.013 kb on - strand, within SMc03200at 3164.013 kb on - strand, within SMc03200

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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3,161,820 + SMc03198 0.22 -0.3
3,161,877 + SMc03198 0.27 -0.3
3,161,878 - SMc03198 0.27 -0.2
3,161,878 - SMc03198 0.27 +0.3
3,162,102 + SMc03198 0.48 -1.0
3,162,103 - SMc03198 0.48 -0.1
3,162,144 + SMc03198 0.52 -0.1
3,162,144 + SMc03198 0.52 -0.1
3,162,144 + -0.4
3,162,144 + SMc03198 0.52 -0.7
3,162,145 - SMc03198 0.52 +0.8
3,162,145 - SMc03198 0.52 -0.1
3,162,347 - SMc03198 0.71 -0.2
3,162,414 + SMc03198 0.77 +0.6
3,162,414 + SMc03198 0.77 +0.4
3,162,539 - SMc03198 0.89 -0.0
3,162,539 - SMc03198 0.89 -0.2
3,162,671 - +0.5
3,162,879 - SMc03199 0.40 +0.1
3,162,879 - SMc03199 0.40 -1.0
3,162,901 - SMc03199 0.44 +0.2
3,162,923 + SMc03199 0.48 -0.3
3,162,923 + SMc03199 0.48 -0.2
3,162,924 - SMc03199 0.48 -0.7
3,162,924 - SMc03199 0.48 -0.3
3,163,075 + SMc03199 0.77 +0.0
3,163,076 - SMc03199 0.77 -0.5
3,163,076 - SMc03199 0.77 -0.9
3,163,076 - SMc03199 0.77 -0.8
3,163,076 - SMc03199 0.77 -0.3
3,163,210 - -0.4
3,163,321 + +0.2
3,163,550 + SMc03200 0.24 +0.1
3,163,551 - SMc03200 0.24 +0.5
3,163,552 + SMc03200 0.24 +0.1
3,163,553 - SMc03200 0.24 -0.3
3,163,697 + SMc03200 0.35 -0.2
3,163,698 - SMc03200 0.35 +0.1
3,163,699 + SMc03200 0.35 +0.6
3,163,700 - SMc03200 0.35 -0.8
3,164,012 + SMc03200 0.58 +0.7
3,164,012 + SMc03200 0.58 +0.2
3,164,012 + SMc03200 0.58 -0.4
3,164,013 - SMc03200 0.58 -0.0
3,164,013 - SMc03200 0.58 -1.4
3,164,013 - SMc03200 0.58 -0.1

Or see this region's nucleotide sequence