Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03127 and SMc03126 overlap by 4 nucleotides SMc03126 and SMc03125 overlap by 4 nucleotides SMc03125 and SMc03124 are separated by 93 nucleotides
SMc03127: SMc03127 - ABC transporter permease, at 3,202,125 to 3,203,051
SMc03127
SMc03126: SMc03126 - transport system ATP-binding ABC transporter protein, at 3,203,048 to 3,204,046
SMc03126
SMc03125: SMc03125 - transport system ATP-binding ABC transporter protein, at 3,204,043 to 3,205,056
SMc03125
SMc03124: SMc03124 - periplasmic binding ABC transporter protein, at 3,205,150 to 3,206,778
SMc03124
Position (kb) 3204
3205
3206 Strain fitness (log2 ratio) -2
-1
0
1 at 3203.301 kb on + strand, within SMc03126 at 3204.006 kb on + strand at 3204.707 kb on + strand, within SMc03125 at 3205.141 kb on + strand at 3205.405 kb on - strand, within SMc03124 at 3205.599 kb on - strand, within SMc03124 at 3205.638 kb on - strand, within SMc03124 at 3205.638 kb on - strand, within SMc03124 at 3205.719 kb on - strand, within SMc03124 at 3205.846 kb on + strand, within SMc03124
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 3,203,301 + SMc03126 0.25 +0.0 3,204,006 + -1.9 3,204,707 + SMc03125 0.65 +0.4 3,205,141 + -0.8 3,205,405 - SMc03124 0.16 -2.4 3,205,599 - SMc03124 0.28 -1.4 3,205,638 - SMc03124 0.30 -1.3 3,205,638 - SMc03124 0.30 -0.7 3,205,719 - SMc03124 0.35 -1.6 3,205,846 + SMc03124 0.43 +0.8
Or see this region's nucleotide sequence