Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02230 and SMc02231 are separated by 90 nucleotides SMc02231 and SMc02232 are separated by 337 nucleotides
SMc02230: SMc02230 - hypothetical protein, at 593,695 to 596,577
SMc02230
SMc02231: SMc02231 - hypothetical protein, at 596,668 to 597,357
SMc02231
SMc02232: SMc02232 - hypothetical protein, at 597,695 to 598,621
SMc02232
Position (kb) 596
597
598 Strain fitness (log2 ratio) -2
-1
0
1 at 596.575 kb on + strand at 596.576 kb on - strand at 596.576 kb on - strand at 596.583 kb on - strand at 596.583 kb on - strand at 596.645 kb on - strand at 596.702 kb on - strand at 596.702 kb on - strand at 596.702 kb on - strand at 596.752 kb on + strand, within SMc02231 at 596.752 kb on + strand, within SMc02231 at 596.753 kb on - strand, within SMc02231 at 596.753 kb on - strand, within SMc02231 at 597.211 kb on - strand, within SMc02231 at 597.515 kb on + strand at 597.515 kb on + strand at 597.515 kb on + strand at 597.515 kb on + strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.516 kb on - strand at 597.541 kb on + strand at 597.542 kb on - strand at 597.705 kb on - strand at 597.831 kb on - strand, within SMc02232 at 597.932 kb on - strand, within SMc02232 at 598.047 kb on - strand, within SMc02232 at 598.054 kb on - strand, within SMc02232 at 598.311 kb on - strand, within SMc02232
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 596,575 + -0.5 596,576 - +0.3 596,576 - -0.0 596,583 - +0.7 596,583 - -0.1 596,645 - +0.3 596,702 - +1.6 596,702 - -0.1 596,702 - +0.0 596,752 + SMc02231 0.12 +0.0 596,752 + SMc02231 0.12 -1.3 596,753 - SMc02231 0.12 -0.2 596,753 - SMc02231 0.12 -0.1 597,211 - SMc02231 0.79 -1.2 597,515 + -0.7 597,515 + -0.4 597,515 + +0.2 597,515 + -0.2 597,516 - -2.3 597,516 - -0.3 597,516 - +0.2 597,516 - -1.8 597,516 - -0.7 597,516 - +0.0 597,516 - -1.0 597,516 - +0.3 597,516 - -0.1 597,541 + +0.3 597,542 - +0.3 597,705 - -0.5 597,831 - SMc02232 0.15 -1.4 597,932 - SMc02232 0.26 -0.4 598,047 - SMc02232 0.38 -1.5 598,054 - SMc02232 0.39 -0.7 598,311 - SMc02232 0.66 -1.7
Or see this region's nucleotide sequence