Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1660 and SMa1662 are separated by 436 nucleotides SMa1662 and SMa1664 overlap by 4 nucleotides
SMa1660: SMa1660 - hypothetical protein, at 926,871 to 927,455
SMa1660
SMa1662: SMa1662 - Cation/multidrug efflux pump, at 927,892 to 931,026
SMa1662
SMa1664: SMa1664 - HlyD-family protein, at 931,023 to 932,189
SMa1664
Position (kb) 927
928
929
930
931
932 Strain fitness (log2 ratio) -2
-1
0
1 at 927.098 kb on - strand, within SMa1660 at 927.098 kb on - strand, within SMa1660 at 927.121 kb on + strand, within SMa1660 at 927.253 kb on + strand, within SMa1660 at 927.335 kb on - strand, within SMa1660 at 927.335 kb on - strand, within SMa1660 at 927.368 kb on + strand, within SMa1660 at 927.431 kb on + strand at 927.471 kb on + strand at 927.509 kb on - strand at 927.614 kb on + strand at 927.615 kb on - strand at 927.615 kb on - strand at 927.673 kb on + strand at 927.679 kb on + strand at 927.679 kb on + strand at 927.680 kb on - strand at 927.680 kb on - strand at 927.756 kb on + strand at 927.761 kb on + strand at 927.762 kb on - strand at 927.848 kb on - strand at 927.848 kb on - strand at 927.848 kb on - strand at 927.966 kb on - strand at 928.118 kb on - strand at 928.241 kb on - strand, within SMa1662 at 928.241 kb on - strand, within SMa1662 at 928.262 kb on + strand, within SMa1662 at 928.263 kb on - strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.265 kb on - strand, within SMa1662 at 928.364 kb on + strand, within SMa1662 at 928.385 kb on + strand, within SMa1662 at 928.737 kb on - strand, within SMa1662 at 929.027 kb on - strand, within SMa1662 at 929.196 kb on + strand, within SMa1662 at 929.197 kb on - strand, within SMa1662 at 929.197 kb on - strand, within SMa1662 at 929.316 kb on + strand, within SMa1662 at 929.378 kb on + strand, within SMa1662 at 929.407 kb on + strand, within SMa1662 at 929.456 kb on + strand, within SMa1662 at 929.457 kb on - strand, within SMa1662 at 929.842 kb on - strand, within SMa1662 at 929.848 kb on - strand, within SMa1662 at 929.848 kb on - strand, within SMa1662 at 929.864 kb on - strand, within SMa1662 at 929.871 kb on - strand, within SMa1662 at 929.954 kb on + strand, within SMa1662 at 929.954 kb on + strand, within SMa1662 at 930.244 kb on + strand, within SMa1662 at 930.245 kb on - strand, within SMa1662 at 930.245 kb on - strand, within SMa1662 at 930.276 kb on + strand, within SMa1662 at 930.433 kb on + strand, within SMa1662 at 930.465 kb on + strand, within SMa1662 at 930.466 kb on - strand, within SMa1662 at 930.476 kb on + strand, within SMa1662 at 930.551 kb on + strand, within SMa1662 at 930.552 kb on - strand, within SMa1662 at 930.566 kb on - strand, within SMa1662 at 930.566 kb on - strand, within SMa1662 at 930.593 kb on + strand, within SMa1662 at 930.758 kb on + strand at 930.758 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.791 kb on + strand at 930.792 kb on - strand at 930.792 kb on - strand at 930.792 kb on - strand at 930.792 kb on - strand at 930.875 kb on + strand at 930.876 kb on - strand at 931.240 kb on - strand, within SMa1664 at 931.371 kb on - strand, within SMa1664 at 931.454 kb on - strand, within SMa1664 at 931.645 kb on + strand, within SMa1664 at 931.694 kb on - strand, within SMa1664 at 931.907 kb on - strand, within SMa1664 at 931.907 kb on - strand, within SMa1664
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 927,098 - SMa1660 0.39 +0.2 927,098 - SMa1660 0.39 -0.6 927,121 + SMa1660 0.43 +0.7 927,253 + SMa1660 0.65 +0.1 927,335 - SMa1660 0.79 -1.9 927,335 - SMa1660 0.79 +0.2 927,368 + SMa1660 0.85 -0.5 927,431 + -0.9 927,471 + +0.2 927,509 - +0.1 927,614 + -0.3 927,615 - -0.4 927,615 - +0.3 927,673 + -0.9 927,679 + -0.4 927,679 + +0.1 927,680 - -0.2 927,680 - +0.8 927,756 + +0.1 927,761 + -1.3 927,762 - -0.1 927,848 - -0.7 927,848 - -0.5 927,848 - +0.4 927,966 - +0.3 928,118 - +0.6 928,241 - SMa1662 0.11 -0.2 928,241 - SMa1662 0.11 -0.7 928,262 + SMa1662 0.12 -0.7 928,263 - SMa1662 0.12 -0.4 928,264 + SMa1662 0.12 +0.3 928,264 + SMa1662 0.12 -0.7 928,264 + SMa1662 0.12 +0.8 928,265 - SMa1662 0.12 -0.7 928,364 + SMa1662 0.15 -0.8 928,385 + SMa1662 0.16 -0.1 928,737 - SMa1662 0.27 -0.1 929,027 - SMa1662 0.36 +0.1 929,196 + SMa1662 0.42 -1.6 929,197 - SMa1662 0.42 -0.5 929,197 - SMa1662 0.42 +0.0 929,316 + SMa1662 0.45 -0.5 929,378 + SMa1662 0.47 -0.7 929,407 + SMa1662 0.48 -0.6 929,456 + SMa1662 0.50 +1.7 929,457 - SMa1662 0.50 +0.2 929,842 - SMa1662 0.62 -0.4 929,848 - SMa1662 0.62 +0.3 929,848 - SMa1662 0.62 -1.4 929,864 - SMa1662 0.63 -0.2 929,871 - SMa1662 0.63 +0.1 929,954 + SMa1662 0.66 +0.2 929,954 + SMa1662 0.66 -1.1 930,244 + SMa1662 0.75 -0.5 930,245 - SMa1662 0.75 +0.1 930,245 - SMa1662 0.75 -0.3 930,276 + SMa1662 0.76 -0.3 930,433 + SMa1662 0.81 -0.2 930,465 + SMa1662 0.82 -0.5 930,466 - SMa1662 0.82 -0.2 930,476 + SMa1662 0.82 -0.2 930,551 + SMa1662 0.85 -0.1 930,552 - SMa1662 0.85 -0.5 930,566 - SMa1662 0.85 -0.4 930,566 - SMa1662 0.85 -0.0 930,593 + SMa1662 0.86 +0.1 930,758 + +0.0 930,758 + -0.3 930,791 + +0.3 930,791 + +0.1 930,791 + -0.3 930,791 + +0.1 930,791 + -0.5 930,791 + +0.3 930,792 - -0.0 930,792 - +0.2 930,792 - -0.2 930,792 - +1.4 930,875 + +0.3 930,876 - +0.9 931,240 - SMa1664 0.19 -0.4 931,371 - SMa1664 0.30 +0.3 931,454 - SMa1664 0.37 +0.6 931,645 + SMa1664 0.53 -0.5 931,694 - SMa1664 0.57 -0.1 931,907 - SMa1664 0.76 +0.2 931,907 - SMa1664 0.76 -1.2
Or see this region's nucleotide sequence