Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1505 and SMa1507 are separated by 53 nucleotides SMa1507 and SMa1509 are separated by 84 nucleotides
SMa1505: SMa1505 - GntR family transcriptional regulator, at 830,383 to 831,168
SMa1505
SMa1507: SMa1507 - hypothetical protein, at 831,222 to 832,316
SMa1507
SMa1509: SMa1509 - ATP transporter ATP-binding protein, at 832,401 to 833,936
SMa1509
Position (kb) 831
832
833 Strain fitness (log2 ratio) -1
0
1
2 at 830.628 kb on - strand, within SMa1505 at 830.629 kb on + strand, within SMa1505 at 830.630 kb on - strand, within SMa1505 at 830.630 kb on - strand, within SMa1505 at 830.790 kb on + strand, within SMa1505 at 830.790 kb on + strand, within SMa1505 at 830.790 kb on + strand, within SMa1505 at 830.897 kb on - strand, within SMa1505 at 831.000 kb on - strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.007 kb on + strand, within SMa1505 at 831.008 kb on - strand, within SMa1505 at 831.009 kb on + strand, within SMa1505 at 831.009 kb on + strand, within SMa1505 at 831.009 kb on + strand, within SMa1505 at 831.010 kb on - strand, within SMa1505 at 831.010 kb on - strand, within SMa1505 at 831.010 kb on - strand, within SMa1505 at 831.010 kb on - strand, within SMa1505 at 831.167 kb on - strand at 831.256 kb on - strand at 831.342 kb on + strand, within SMa1507 at 831.342 kb on + strand, within SMa1507 at 831.343 kb on - strand, within SMa1507 at 831.639 kb on + strand, within SMa1507 at 831.643 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.851 kb on + strand, within SMa1507 at 831.910 kb on + strand, within SMa1507 at 831.910 kb on + strand, within SMa1507 at 831.998 kb on + strand, within SMa1507 at 831.999 kb on - strand, within SMa1507 at 832.113 kb on + strand, within SMa1507 at 832.113 kb on + strand, within SMa1507 at 832.114 kb on - strand, within SMa1507 at 832.114 kb on - strand, within SMa1507 at 832.495 kb on + strand at 832.495 kb on + strand at 832.496 kb on - strand at 832.552 kb on - strand at 832.552 kb on - strand at 832.584 kb on + strand, within SMa1509 at 832.584 kb on + strand, within SMa1509 at 832.654 kb on - strand, within SMa1509 at 832.971 kb on + strand, within SMa1509 at 832.972 kb on - strand, within SMa1509 at 832.972 kb on - strand, within SMa1509 at 832.973 kb on + strand, within SMa1509 at 832.973 kb on + strand, within SMa1509 at 833.196 kb on + strand, within SMa1509 at 833.196 kb on + strand, within SMa1509 at 833.197 kb on - strand, within SMa1509 at 833.197 kb on - strand, within SMa1509 at 833.218 kb on + strand, within SMa1509 at 833.218 kb on + strand, within SMa1509 at 833.218 kb on + strand, within SMa1509 at 833.218 kb on + strand, within SMa1509 at 833.218 kb on + strand, within SMa1509
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 830,628 - SMa1505 0.31 +0.2 830,629 + SMa1505 0.31 +0.1 830,630 - SMa1505 0.31 +0.2 830,630 - SMa1505 0.31 -1.2 830,790 + SMa1505 0.52 +0.6 830,790 + SMa1505 0.52 -0.0 830,790 + SMa1505 0.52 -0.2 830,897 - SMa1505 0.65 +0.5 831,000 - SMa1505 0.78 -1.0 831,007 + SMa1505 0.79 -0.9 831,007 + SMa1505 0.79 -1.4 831,007 + SMa1505 0.79 +0.5 831,007 + SMa1505 0.79 +0.4 831,008 - SMa1505 0.80 +0.2 831,009 + SMa1505 0.80 -0.3 831,009 + SMa1505 0.80 -0.7 831,009 + SMa1505 0.80 +0.1 831,010 - SMa1505 0.80 +0.4 831,010 - SMa1505 0.80 +1.0 831,010 - SMa1505 0.80 +0.1 831,010 - SMa1505 0.80 +0.6 831,167 - +1.4 831,256 - -0.0 831,342 + SMa1507 0.11 +0.2 831,342 + SMa1507 0.11 +0.1 831,343 - SMa1507 0.11 +0.2 831,639 + SMa1507 0.38 +0.3 831,643 - SMa1507 0.38 -0.2 831,681 - SMa1507 0.42 +2.4 831,681 - SMa1507 0.42 +2.0 831,681 - SMa1507 0.42 +0.4 831,681 - SMa1507 0.42 -0.0 831,851 + SMa1507 0.57 -0.3 831,910 + SMa1507 0.63 -1.0 831,910 + SMa1507 0.63 +0.9 831,998 + SMa1507 0.71 +0.4 831,999 - SMa1507 0.71 +0.5 832,113 + SMa1507 0.81 -0.3 832,113 + SMa1507 0.81 -0.3 832,114 - SMa1507 0.81 +0.1 832,114 - SMa1507 0.81 +0.4 832,495 + -0.2 832,495 + +0.8 832,496 - +0.5 832,552 - -0.8 832,552 - +0.2 832,584 + SMa1509 0.12 +0.2 832,584 + SMa1509 0.12 +0.4 832,654 - SMa1509 0.16 +0.0 832,971 + SMa1509 0.37 -0.2 832,972 - SMa1509 0.37 +0.0 832,972 - SMa1509 0.37 +0.1 832,973 + SMa1509 0.37 +0.2 832,973 + SMa1509 0.37 -0.0 833,196 + SMa1509 0.52 +0.5 833,196 + SMa1509 0.52 +0.9 833,197 - SMa1509 0.52 -0.3 833,197 - SMa1509 0.52 -0.7 833,218 + SMa1509 0.53 +0.2 833,218 + SMa1509 0.53 +0.1 833,218 + SMa1509 0.53 -0.0 833,218 + SMa1509 0.53 +0.3 833,218 + SMa1509 0.53 -1.4
Or see this region's nucleotide sequence