Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21696 and SM_b21697 overlap by 14 nucleotides SM_b21697 and SM_b21661 are separated by 542 nucleotides SM_b21661 and SM_b21711 overlap by 28 nucleotides
SM_b21696: SM_b21696 - hypothetical protein, at 672,636 to 673,517
_b21696
SM_b21697: SM_b21697 - hypothetical protein, at 673,504 to 674,031
_b21697
SM_b21661: SM_b21661 - transposase of insertion sequence ISRm10-1, orfA protein, at 674,574 to 674,957
_b21661
SM_b21711: SM_b21711 - transposase of insertion sequence ISRm10-1, orfB N-terminus protein, at 674,930 to 675,061
_b21711
Position (kb) 673
674
675 Strain fitness (log2 ratio) -2
-1
0
1
2 at 672.504 kb on + strand at 672.504 kb on + strand at 672.504 kb on + strand at 672.504 kb on + strand at 672.504 kb on + strand at 672.555 kb on - strand at 672.635 kb on + strand at 672.768 kb on - strand, within SM_b21696 at 672.803 kb on + strand, within SM_b21696 at 672.804 kb on - strand, within SM_b21696 at 672.900 kb on + strand, within SM_b21696 at 672.900 kb on + strand, within SM_b21696 at 672.901 kb on - strand, within SM_b21696 at 672.914 kb on - strand, within SM_b21696 at 672.942 kb on + strand, within SM_b21696 at 672.942 kb on + strand, within SM_b21696 at 673.121 kb on - strand, within SM_b21696 at 673.121 kb on - strand, within SM_b21696 at 673.302 kb on + strand, within SM_b21696 at 673.302 kb on + strand, within SM_b21696 at 673.303 kb on - strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.330 kb on - strand, within SM_b21696 at 673.595 kb on + strand, within SM_b21697 at 673.595 kb on + strand, within SM_b21697 at 673.595 kb on + strand, within SM_b21697 at 673.596 kb on - strand, within SM_b21697 at 673.596 kb on - strand, within SM_b21697 at 673.748 kb on + strand, within SM_b21697 at 673.748 kb on + strand, within SM_b21697 at 673.749 kb on - strand, within SM_b21697 at 673.780 kb on - strand, within SM_b21697 at 673.879 kb on - strand, within SM_b21697 at 673.906 kb on + strand, within SM_b21697 at 673.906 kb on + strand, within SM_b21697 at 673.906 kb on + strand, within SM_b21697 at 673.996 kb on + strand at 674.010 kb on + strand at 674.010 kb on + strand at 674.010 kb on + strand at 674.011 kb on - strand at 674.011 kb on - strand at 674.058 kb on + strand at 674.064 kb on + strand at 674.064 kb on + strand at 674.065 kb on - strand at 674.065 kb on - strand at 674.104 kb on + strand at 674.138 kb on + strand at 674.150 kb on + strand at 674.254 kb on + strand at 674.254 kb on + strand at 674.255 kb on - strand at 674.255 kb on - strand at 674.255 kb on - strand at 674.255 kb on - strand at 674.300 kb on + strand at 674.356 kb on + strand at 674.384 kb on - strand at 674.401 kb on + strand at 674.401 kb on + strand at 674.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 672,504 + +0.1 672,504 + +0.0 672,504 + -0.2 672,504 + +0.1 672,504 + +0.5 672,555 - -0.2 672,635 + -0.0 672,768 - SM_b21696 0.15 +0.2 672,803 + SM_b21696 0.19 +0.1 672,804 - SM_b21696 0.19 -0.3 672,900 + SM_b21696 0.30 +0.7 672,900 + SM_b21696 0.30 -0.3 672,901 - SM_b21696 0.30 +0.5 672,914 - SM_b21696 0.32 +2.1 672,942 + SM_b21696 0.35 -0.1 672,942 + SM_b21696 0.35 +0.0 673,121 - SM_b21696 0.55 +0.3 673,121 - SM_b21696 0.55 -0.3 673,302 + SM_b21696 0.76 +0.0 673,302 + SM_b21696 0.76 -1.7 673,303 - SM_b21696 0.76 -0.3 673,329 + SM_b21696 0.79 +0.0 673,329 + SM_b21696 0.79 -0.1 673,329 + SM_b21696 0.79 +0.3 673,329 + SM_b21696 0.79 -0.0 673,329 + SM_b21696 0.79 +1.7 673,329 + SM_b21696 0.79 +1.2 673,330 - SM_b21696 0.79 -0.1 673,595 + SM_b21697 0.17 -0.1 673,595 + SM_b21697 0.17 -0.1 673,595 + SM_b21697 0.17 -0.6 673,596 - SM_b21697 0.17 -1.0 673,596 - SM_b21697 0.17 -0.1 673,748 + SM_b21697 0.46 -0.5 673,748 + SM_b21697 0.46 +0.3 673,749 - SM_b21697 0.46 -1.1 673,780 - SM_b21697 0.52 -0.6 673,879 - SM_b21697 0.71 -0.0 673,906 + SM_b21697 0.76 -1.6 673,906 + SM_b21697 0.76 +0.1 673,906 + SM_b21697 0.76 -0.3 673,996 + -0.5 674,010 + -1.4 674,010 + -0.8 674,010 + +0.0 674,011 - +1.3 674,011 - -1.9 674,058 + +0.8 674,064 + -0.3 674,064 + +0.3 674,065 - +0.2 674,065 - +0.2 674,104 + +0.3 674,138 + +0.1 674,150 + +0.2 674,254 + +0.9 674,254 + +0.4 674,255 - +1.2 674,255 - -1.6 674,255 - +0.1 674,255 - -0.3 674,300 + +0.2 674,356 + -0.1 674,384 - +1.3 674,401 + -0.0 674,401 + -0.2 674,405 - +0.2
Or see this region's nucleotide sequence