Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21351

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21349 and SM_b21350 are separated by 132 nucleotidesSM_b21350 and SM_b21351 are separated by 8 nucleotidesSM_b21351 and SM_b21352 are separated by 4 nucleotidesSM_b21352 and SM_b21353 are separated by 154 nucleotides SM_b21349: SM_b21349 - 5-keto-4-deoxyuronate isomerase, at 1,014,808 to 1,015,656 _b21349 SM_b21350: SM_b21350 - GntR family transcriptional regulator, at 1,015,789 to 1,016,538 _b21350 SM_b21351: SM_b21351 - C4-dicarboxylate large membrane transport protein, at 1,016,547 to 1,017,830 _b21351 SM_b21352: SM_b21352 - C4-dicarboxylate small membrane transport protein, at 1,017,835 to 1,018,332 _b21352 SM_b21353: SM_b21353 - periplasmic C4-dicarboxylate transport protein, at 1,018,487 to 1,019,464 _b21353 Position (kb) 1016 1017 1018Strain fitness (log2 ratio) -2 -1 0 1 2at 1015.634 kb on + strandat 1015.696 kb on + strandat 1015.696 kb on + strandat 1015.697 kb on - strandat 1015.697 kb on - strandat 1015.700 kb on + strandat 1015.701 kb on - strandat 1015.701 kb on - strandat 1015.724 kb on + strandat 1015.725 kb on - strandat 1015.759 kb on - strandat 1016.051 kb on + strand, within SM_b21350at 1016.052 kb on - strand, within SM_b21350at 1016.052 kb on - strand, within SM_b21350at 1016.054 kb on + strand, within SM_b21350at 1016.181 kb on + strand, within SM_b21350at 1016.455 kb on + strand, within SM_b21350at 1016.455 kb on + strand, within SM_b21350at 1016.456 kb on - strand, within SM_b21350at 1016.575 kb on - strandat 1016.593 kb on + strandat 1016.594 kb on - strandat 1016.594 kb on - strandat 1016.594 kb on - strandat 1016.640 kb on + strandat 1016.640 kb on + strandat 1016.641 kb on - strandat 1016.641 kb on - strandat 1016.739 kb on + strand, within SM_b21351at 1016.739 kb on + strand, within SM_b21351at 1016.779 kb on + strand, within SM_b21351at 1016.878 kb on - strand, within SM_b21351at 1016.878 kb on - strand, within SM_b21351at 1016.883 kb on + strand, within SM_b21351at 1016.884 kb on - strand, within SM_b21351at 1016.884 kb on - strand, within SM_b21351at 1016.884 kb on - strand, within SM_b21351at 1017.088 kb on + strand, within SM_b21351at 1017.088 kb on + strand, within SM_b21351at 1017.089 kb on - strand, within SM_b21351at 1017.138 kb on + strand, within SM_b21351at 1017.138 kb on + strand, within SM_b21351at 1017.194 kb on - strand, within SM_b21351at 1017.194 kb on - strand, within SM_b21351at 1017.259 kb on + strand, within SM_b21351at 1017.286 kb on + strand, within SM_b21351at 1017.359 kb on - strand, within SM_b21351at 1017.359 kb on - strand, within SM_b21351at 1017.443 kb on - strand, within SM_b21351at 1017.480 kb on + strand, within SM_b21351at 1017.481 kb on - strand, within SM_b21351at 1017.643 kb on + strand, within SM_b21351at 1017.643 kb on + strand, within SM_b21351at 1017.644 kb on - strand, within SM_b21351at 1017.731 kb on - strandat 1017.845 kb on - strandat 1017.845 kb on - strandat 1017.989 kb on + strand, within SM_b21352at 1017.989 kb on + strand, within SM_b21352at 1018.145 kb on + strand, within SM_b21352at 1018.145 kb on + strand, within SM_b21352at 1018.146 kb on - strand, within SM_b21352at 1018.146 kb on - strand, within SM_b21352at 1018.146 kb on - strand, within SM_b21352at 1018.146 kb on - strand, within SM_b21352at 1018.172 kb on + strand, within SM_b21352at 1018.173 kb on - strand, within SM_b21352at 1018.173 kb on - strand, within SM_b21352at 1018.448 kb on + strandat 1018.503 kb on - strandat 1018.551 kb on + strandat 1018.754 kb on + strand, within SM_b21353at 1018.754 kb on + strand, within SM_b21353at 1018.755 kb on - strand, within SM_b21353at 1018.789 kb on - strand, within SM_b21353at 1018.789 kb on - strand, within SM_b21353at 1018.789 kb on - strand, within SM_b21353at 1018.799 kb on + strand, within SM_b21353at 1018.799 kb on + strand, within SM_b21353at 1018.825 kb on - strand, within SM_b21353at 1018.825 kb on - strand, within SM_b21353

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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1,015,634 + +1.0
1,015,696 + +0.1
1,015,696 + -0.5
1,015,697 - +2.5
1,015,697 - +0.3
1,015,700 + +0.4
1,015,701 - -0.0
1,015,701 - +0.3
1,015,724 + -0.4
1,015,725 - -0.1
1,015,759 - -0.1
1,016,051 + SM_b21350 0.35 -1.3
1,016,052 - SM_b21350 0.35 +1.0
1,016,052 - SM_b21350 0.35 +0.0
1,016,054 + SM_b21350 0.35 +0.1
1,016,181 + SM_b21350 0.52 -0.2
1,016,455 + SM_b21350 0.89 -0.1
1,016,455 + SM_b21350 0.89 -0.7
1,016,456 - SM_b21350 0.89 +0.1
1,016,575 - -0.5
1,016,593 + +0.4
1,016,594 - +0.3
1,016,594 - -0.2
1,016,594 - -0.3
1,016,640 + +0.1
1,016,640 + +0.3
1,016,641 - +0.5
1,016,641 - +0.7
1,016,739 + SM_b21351 0.15 -1.1
1,016,739 + SM_b21351 0.15 +1.4
1,016,779 + SM_b21351 0.18 +1.1
1,016,878 - SM_b21351 0.26 +0.9
1,016,878 - SM_b21351 0.26 +1.0
1,016,883 + SM_b21351 0.26 -0.5
1,016,884 - SM_b21351 0.26 -0.4
1,016,884 - SM_b21351 0.26 +0.6
1,016,884 - SM_b21351 0.26 -1.4
1,017,088 + SM_b21351 0.42 +0.2
1,017,088 + SM_b21351 0.42 -0.3
1,017,089 - SM_b21351 0.42 +0.6
1,017,138 + SM_b21351 0.46 -0.0
1,017,138 + SM_b21351 0.46 -0.7
1,017,194 - SM_b21351 0.50 +0.2
1,017,194 - SM_b21351 0.50 -0.1
1,017,259 + SM_b21351 0.55 +0.1
1,017,286 + SM_b21351 0.58 +1.7
1,017,359 - SM_b21351 0.63 -0.4
1,017,359 - SM_b21351 0.63 +0.6
1,017,443 - SM_b21351 0.70 +1.6
1,017,480 + SM_b21351 0.73 +0.0
1,017,481 - SM_b21351 0.73 +0.1
1,017,643 + SM_b21351 0.85 +0.7
1,017,643 + SM_b21351 0.85 +0.5
1,017,644 - SM_b21351 0.85 -0.2
1,017,731 - +0.2
1,017,845 - +0.2
1,017,845 - -0.9
1,017,989 + SM_b21352 0.31 +0.3
1,017,989 + SM_b21352 0.31 +1.0
1,018,145 + SM_b21352 0.62 +0.4
1,018,145 + SM_b21352 0.62 -1.2
1,018,146 - SM_b21352 0.62 -0.1
1,018,146 - SM_b21352 0.62 +0.5
1,018,146 - SM_b21352 0.62 +0.2
1,018,146 - SM_b21352 0.62 +0.2
1,018,172 + SM_b21352 0.68 +1.1
1,018,173 - SM_b21352 0.68 +0.5
1,018,173 - SM_b21352 0.68 -0.7
1,018,448 + +0.3
1,018,503 - +0.5
1,018,551 + +0.2
1,018,754 + SM_b21353 0.27 -2.2
1,018,754 + SM_b21353 0.27 +0.2
1,018,755 - SM_b21353 0.27 -0.8
1,018,789 - SM_b21353 0.31 +0.0
1,018,789 - SM_b21353 0.31 +0.5
1,018,789 - SM_b21353 0.31 -0.3
1,018,799 + SM_b21353 0.32 -0.1
1,018,799 + SM_b21353 0.32 +1.3
1,018,825 - SM_b21353 0.35 +0.3
1,018,825 - SM_b21353 0.35 +0.9

Or see this region's nucleotide sequence