Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21349 and SM_b21350 are separated by 132 nucleotides SM_b21350 and SM_b21351 are separated by 8 nucleotides SM_b21351 and SM_b21352 are separated by 4 nucleotides SM_b21352 and SM_b21353 are separated by 154 nucleotides
SM_b21349: SM_b21349 - 5-keto-4-deoxyuronate isomerase, at 1,014,808 to 1,015,656
_b21349
SM_b21350: SM_b21350 - GntR family transcriptional regulator, at 1,015,789 to 1,016,538
_b21350
SM_b21351: SM_b21351 - C4-dicarboxylate large membrane transport protein, at 1,016,547 to 1,017,830
_b21351
SM_b21352: SM_b21352 - C4-dicarboxylate small membrane transport protein, at 1,017,835 to 1,018,332
_b21352
SM_b21353: SM_b21353 - periplasmic C4-dicarboxylate transport protein, at 1,018,487 to 1,019,464
_b21353
Position (kb)
1016
1017
1018 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1015.634 kb on + strand at 1015.696 kb on + strand at 1015.696 kb on + strand at 1015.697 kb on - strand at 1015.697 kb on - strand at 1015.700 kb on + strand at 1015.701 kb on - strand at 1015.701 kb on - strand at 1015.724 kb on + strand at 1015.725 kb on - strand at 1015.759 kb on - strand at 1016.051 kb on + strand, within SM_b21350 at 1016.052 kb on - strand, within SM_b21350 at 1016.052 kb on - strand, within SM_b21350 at 1016.054 kb on + strand, within SM_b21350 at 1016.181 kb on + strand, within SM_b21350 at 1016.455 kb on + strand, within SM_b21350 at 1016.455 kb on + strand, within SM_b21350 at 1016.456 kb on - strand, within SM_b21350 at 1016.575 kb on - strand at 1016.593 kb on + strand at 1016.594 kb on - strand at 1016.594 kb on - strand at 1016.594 kb on - strand at 1016.640 kb on + strand at 1016.640 kb on + strand at 1016.641 kb on - strand at 1016.641 kb on - strand at 1016.739 kb on + strand, within SM_b21351 at 1016.739 kb on + strand, within SM_b21351 at 1016.779 kb on + strand, within SM_b21351 at 1016.878 kb on - strand, within SM_b21351 at 1016.878 kb on - strand, within SM_b21351 at 1016.883 kb on + strand, within SM_b21351 at 1016.884 kb on - strand, within SM_b21351 at 1016.884 kb on - strand, within SM_b21351 at 1016.884 kb on - strand, within SM_b21351 at 1017.088 kb on + strand, within SM_b21351 at 1017.088 kb on + strand, within SM_b21351 at 1017.089 kb on - strand, within SM_b21351 at 1017.138 kb on + strand, within SM_b21351 at 1017.138 kb on + strand, within SM_b21351 at 1017.194 kb on - strand, within SM_b21351 at 1017.194 kb on - strand, within SM_b21351 at 1017.259 kb on + strand, within SM_b21351 at 1017.286 kb on + strand, within SM_b21351 at 1017.359 kb on - strand, within SM_b21351 at 1017.359 kb on - strand, within SM_b21351 at 1017.443 kb on - strand, within SM_b21351 at 1017.480 kb on + strand, within SM_b21351 at 1017.481 kb on - strand, within SM_b21351 at 1017.643 kb on + strand, within SM_b21351 at 1017.643 kb on + strand, within SM_b21351 at 1017.644 kb on - strand, within SM_b21351 at 1017.731 kb on - strand at 1017.845 kb on - strand at 1017.845 kb on - strand at 1017.989 kb on + strand, within SM_b21352 at 1017.989 kb on + strand, within SM_b21352 at 1018.145 kb on + strand, within SM_b21352 at 1018.145 kb on + strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.172 kb on + strand, within SM_b21352 at 1018.173 kb on - strand, within SM_b21352 at 1018.173 kb on - strand, within SM_b21352 at 1018.448 kb on + strand at 1018.503 kb on - strand at 1018.551 kb on + strand at 1018.754 kb on + strand, within SM_b21353 at 1018.754 kb on + strand, within SM_b21353 at 1018.755 kb on - strand, within SM_b21353 at 1018.789 kb on - strand, within SM_b21353 at 1018.789 kb on - strand, within SM_b21353 at 1018.789 kb on - strand, within SM_b21353 at 1018.799 kb on + strand, within SM_b21353 at 1018.799 kb on + strand, within SM_b21353 at 1018.825 kb on - strand, within SM_b21353 at 1018.825 kb on - strand, within SM_b21353
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 1,015,634 + +1.0 1,015,696 + +0.1 1,015,696 + -0.5 1,015,697 - +2.5 1,015,697 - +0.3 1,015,700 + +0.4 1,015,701 - -0.0 1,015,701 - +0.3 1,015,724 + -0.4 1,015,725 - -0.1 1,015,759 - -0.1 1,016,051 + SM_b21350 0.35 -1.3 1,016,052 - SM_b21350 0.35 +1.0 1,016,052 - SM_b21350 0.35 +0.0 1,016,054 + SM_b21350 0.35 +0.1 1,016,181 + SM_b21350 0.52 -0.2 1,016,455 + SM_b21350 0.89 -0.1 1,016,455 + SM_b21350 0.89 -0.7 1,016,456 - SM_b21350 0.89 +0.1 1,016,575 - -0.5 1,016,593 + +0.4 1,016,594 - +0.3 1,016,594 - -0.2 1,016,594 - -0.3 1,016,640 + +0.1 1,016,640 + +0.3 1,016,641 - +0.5 1,016,641 - +0.7 1,016,739 + SM_b21351 0.15 -1.1 1,016,739 + SM_b21351 0.15 +1.4 1,016,779 + SM_b21351 0.18 +1.1 1,016,878 - SM_b21351 0.26 +0.9 1,016,878 - SM_b21351 0.26 +1.0 1,016,883 + SM_b21351 0.26 -0.5 1,016,884 - SM_b21351 0.26 -0.4 1,016,884 - SM_b21351 0.26 +0.6 1,016,884 - SM_b21351 0.26 -1.4 1,017,088 + SM_b21351 0.42 +0.2 1,017,088 + SM_b21351 0.42 -0.3 1,017,089 - SM_b21351 0.42 +0.6 1,017,138 + SM_b21351 0.46 -0.0 1,017,138 + SM_b21351 0.46 -0.7 1,017,194 - SM_b21351 0.50 +0.2 1,017,194 - SM_b21351 0.50 -0.1 1,017,259 + SM_b21351 0.55 +0.1 1,017,286 + SM_b21351 0.58 +1.7 1,017,359 - SM_b21351 0.63 -0.4 1,017,359 - SM_b21351 0.63 +0.6 1,017,443 - SM_b21351 0.70 +1.6 1,017,480 + SM_b21351 0.73 +0.0 1,017,481 - SM_b21351 0.73 +0.1 1,017,643 + SM_b21351 0.85 +0.7 1,017,643 + SM_b21351 0.85 +0.5 1,017,644 - SM_b21351 0.85 -0.2 1,017,731 - +0.2 1,017,845 - +0.2 1,017,845 - -0.9 1,017,989 + SM_b21352 0.31 +0.3 1,017,989 + SM_b21352 0.31 +1.0 1,018,145 + SM_b21352 0.62 +0.4 1,018,145 + SM_b21352 0.62 -1.2 1,018,146 - SM_b21352 0.62 -0.1 1,018,146 - SM_b21352 0.62 +0.5 1,018,146 - SM_b21352 0.62 +0.2 1,018,146 - SM_b21352 0.62 +0.2 1,018,172 + SM_b21352 0.68 +1.1 1,018,173 - SM_b21352 0.68 +0.5 1,018,173 - SM_b21352 0.68 -0.7 1,018,448 + +0.3 1,018,503 - +0.5 1,018,551 + +0.2 1,018,754 + SM_b21353 0.27 -2.2 1,018,754 + SM_b21353 0.27 +0.2 1,018,755 - SM_b21353 0.27 -0.8 1,018,789 - SM_b21353 0.31 +0.0 1,018,789 - SM_b21353 0.31 +0.5 1,018,789 - SM_b21353 0.31 -0.3 1,018,799 + SM_b21353 0.32 -0.1 1,018,799 + SM_b21353 0.32 +1.3 1,018,825 - SM_b21353 0.35 +0.3 1,018,825 - SM_b21353 0.35 +0.9
Or see this region's nucleotide sequence