Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21298 and SM_b21299 are separated by 240 nucleotides SM_b21299 and SM_b21300 are separated by 94 nucleotides
SM_b21298: SM_b21298 - hypothetical protein, at 874,927 to 880,374
_b21298
SM_b21299: SM_b21299 - DeoR family transcriptional regulator, at 880,615 to 881,406
_b21299
SM_b21300: SM_b21300 - deoxyribose-phosphate aldolase, at 881,501 to 882,505
_b21300
Position (kb) 880
881
882 Strain fitness (log2 ratio) -1
0
1
2 at 879.681 kb on - strand, within SM_b21298 at 880.116 kb on + strand at 880.116 kb on + strand at 880.116 kb on + strand at 880.116 kb on + strand at 880.117 kb on - strand at 880.170 kb on - strand at 880.228 kb on + strand at 880.228 kb on + strand at 880.229 kb on - strand at 880.262 kb on + strand at 880.278 kb on + strand at 880.279 kb on - strand at 880.310 kb on - strand at 880.411 kb on + strand at 880.412 kb on - strand at 880.487 kb on + strand at 880.509 kb on + strand at 880.510 kb on - strand at 880.510 kb on - strand at 880.706 kb on + strand, within SM_b21299 at 880.706 kb on + strand, within SM_b21299 at 880.706 kb on + strand, within SM_b21299 at 880.765 kb on + strand, within SM_b21299 at 880.937 kb on - strand, within SM_b21299 at 880.937 kb on - strand, within SM_b21299 at 880.963 kb on + strand, within SM_b21299 at 880.985 kb on - strand, within SM_b21299 at 880.985 kb on - strand, within SM_b21299 at 880.985 kb on - strand, within SM_b21299 at 881.036 kb on + strand, within SM_b21299 at 881.054 kb on - strand, within SM_b21299 at 881.230 kb on + strand, within SM_b21299 at 881.231 kb on - strand, within SM_b21299 at 881.307 kb on + strand, within SM_b21299 at 881.366 kb on - strand at 881.366 kb on - strand at 881.366 kb on - strand at 881.554 kb on + strand at 881.555 kb on - strand at 881.577 kb on + strand at 881.859 kb on - strand, within SM_b21300 at 882.275 kb on + strand, within SM_b21300 at 882.276 kb on - strand, within SM_b21300 at 882.305 kb on + strand, within SM_b21300 at 882.350 kb on + strand, within SM_b21300 at 882.351 kb on - strand, within SM_b21300 at 882.351 kb on - strand, within SM_b21300 at 882.351 kb on - strand, within SM_b21300
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 879,681 - SM_b21298 0.87 +0.3 880,116 + +0.3 880,116 + +0.2 880,116 + -0.2 880,116 + -0.2 880,117 - +0.7 880,170 - +0.2 880,228 + -0.1 880,228 + +1.9 880,229 - -0.1 880,262 + -0.1 880,278 + -0.1 880,279 - +0.1 880,310 - -0.5 880,411 + -1.1 880,412 - -0.1 880,487 + +0.4 880,509 + +0.0 880,510 - -1.2 880,510 - +0.3 880,706 + SM_b21299 0.11 -0.1 880,706 + SM_b21299 0.11 +0.3 880,706 + SM_b21299 0.11 +1.5 880,765 + SM_b21299 0.19 -0.1 880,937 - SM_b21299 0.41 -0.2 880,937 - SM_b21299 0.41 +0.8 880,963 + SM_b21299 0.44 -0.2 880,985 - SM_b21299 0.47 +1.9 880,985 - SM_b21299 0.47 +0.1 880,985 - SM_b21299 0.47 +0.8 881,036 + SM_b21299 0.53 +0.1 881,054 - SM_b21299 0.55 +0.0 881,230 + SM_b21299 0.78 +0.3 881,231 - SM_b21299 0.78 +0.1 881,307 + SM_b21299 0.87 +0.3 881,366 - +1.1 881,366 - -0.5 881,366 - +0.7 881,554 + -0.7 881,555 - +0.4 881,577 + -0.2 881,859 - SM_b21300 0.36 -0.9 882,275 + SM_b21300 0.77 -0.2 882,276 - SM_b21300 0.77 +0.3 882,305 + SM_b21300 0.80 +0.1 882,350 + SM_b21300 0.84 -0.7 882,351 - SM_b21300 0.85 +1.3 882,351 - SM_b21300 0.85 +0.1 882,351 - SM_b21300 0.85 -0.1
Or see this region's nucleotide sequence