Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20776

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20775 and SM_b20776 overlap by 1 nucleotidesSM_b20776 and SM_b20777 are separated by 229 nucleotides SM_b20775: SM_b20775 - TonB-dependent receptor protein, at 1,567,285 to 1,570,887 _b20775 SM_b20776: SM_b20776 - adenylate cyclase, at 1,570,887 to 1,572,836 _b20776 SM_b20777: SM_b20777 - transposase of insertion sequence ISRm19 protein, at 1,573,066 to 1,574,031 _b20777 Position (kb) 1570 1571 1572 1573Strain fitness (log2 ratio) -2 -1 0 1at 1569.906 kb on + strand, within SM_b20775at 1569.934 kb on + strand, within SM_b20775at 1569.935 kb on - strand, within SM_b20775at 1569.935 kb on - strand, within SM_b20775at 1569.936 kb on + strand, within SM_b20775at 1569.948 kb on - strand, within SM_b20775at 1569.959 kb on - strand, within SM_b20775at 1570.097 kb on - strand, within SM_b20775at 1570.097 kb on - strand, within SM_b20775at 1570.097 kb on - strand, within SM_b20775at 1570.159 kb on + strand, within SM_b20775at 1570.163 kb on + strand, within SM_b20775at 1570.163 kb on + strand, within SM_b20775at 1570.163 kb on + strand, within SM_b20775at 1570.163 kb on + strand, within SM_b20775at 1570.164 kb on - strand, within SM_b20775at 1570.268 kb on - strand, within SM_b20775at 1570.268 kb on - strand, within SM_b20775at 1570.269 kb on + strand, within SM_b20775at 1570.270 kb on - strand, within SM_b20775at 1570.270 kb on - strand, within SM_b20775at 1570.348 kb on + strand, within SM_b20775at 1570.348 kb on + strand, within SM_b20775at 1570.414 kb on + strand, within SM_b20775at 1570.646 kb on - strandat 1570.646 kb on - strandat 1570.646 kb on - strandat 1570.662 kb on + strandat 1571.023 kb on - strandat 1571.023 kb on - strandat 1571.023 kb on - strandat 1571.023 kb on - strandat 1571.093 kb on + strandat 1571.419 kb on - strand, within SM_b20776at 1571.472 kb on + strand, within SM_b20776at 1571.520 kb on + strand, within SM_b20776at 1571.536 kb on - strand, within SM_b20776at 1571.536 kb on - strand, within SM_b20776at 1571.538 kb on + strand, within SM_b20776at 1571.539 kb on - strand, within SM_b20776at 1571.721 kb on + strand, within SM_b20776at 1571.722 kb on - strand, within SM_b20776at 1571.867 kb on + strand, within SM_b20776at 1571.868 kb on - strand, within SM_b20776at 1571.889 kb on + strand, within SM_b20776at 1571.889 kb on + strand, within SM_b20776at 1571.889 kb on + strand, within SM_b20776at 1571.889 kb on + strand, within SM_b20776at 1571.983 kb on - strand, within SM_b20776at 1572.034 kb on - strand, within SM_b20776at 1572.034 kb on - strand, within SM_b20776at 1572.148 kb on + strand, within SM_b20776at 1572.149 kb on - strand, within SM_b20776at 1572.255 kb on + strand, within SM_b20776at 1572.255 kb on + strand, within SM_b20776at 1572.256 kb on - strand, within SM_b20776at 1572.489 kb on + strand, within SM_b20776at 1572.550 kb on - strand, within SM_b20776at 1572.550 kb on - strand, within SM_b20776at 1572.578 kb on + strand, within SM_b20776at 1572.729 kb on + strandat 1572.729 kb on + strandat 1572.801 kb on + strandat 1572.838 kb on + strandat 1572.839 kb on - strandat 1572.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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1,569,906 + SM_b20775 0.73 +0.5
1,569,934 + SM_b20775 0.74 -0.0
1,569,935 - SM_b20775 0.74 +0.1
1,569,935 - SM_b20775 0.74 -0.3
1,569,936 + SM_b20775 0.74 +0.3
1,569,948 - SM_b20775 0.74 -1.4
1,569,959 - SM_b20775 0.74 -0.8
1,570,097 - SM_b20775 0.78 +0.4
1,570,097 - SM_b20775 0.78 -0.3
1,570,097 - SM_b20775 0.78 +0.3
1,570,159 + SM_b20775 0.80 +0.3
1,570,163 + SM_b20775 0.80 -0.8
1,570,163 + SM_b20775 0.80 -2.0
1,570,163 + SM_b20775 0.80 -0.7
1,570,163 + SM_b20775 0.80 +0.3
1,570,164 - SM_b20775 0.80 +0.2
1,570,268 - SM_b20775 0.83 +0.1
1,570,268 - SM_b20775 0.83 -0.6
1,570,269 + SM_b20775 0.83 -0.1
1,570,270 - SM_b20775 0.83 -0.2
1,570,270 - SM_b20775 0.83 +0.1
1,570,348 + SM_b20775 0.85 -0.0
1,570,348 + SM_b20775 0.85 -0.0
1,570,414 + SM_b20775 0.87 -0.0
1,570,646 - +0.7
1,570,646 - -0.1
1,570,646 - -0.7
1,570,662 + -0.4
1,571,023 - +0.2
1,571,023 - +0.2
1,571,023 - +0.9
1,571,023 - -1.2
1,571,093 + -1.0
1,571,419 - SM_b20776 0.27 +0.6
1,571,472 + SM_b20776 0.30 +0.3
1,571,520 + SM_b20776 0.32 -0.4
1,571,536 - SM_b20776 0.33 -0.7
1,571,536 - SM_b20776 0.33 -0.9
1,571,538 + SM_b20776 0.33 -0.2
1,571,539 - SM_b20776 0.33 -0.1
1,571,721 + SM_b20776 0.43 -0.9
1,571,722 - SM_b20776 0.43 +0.3
1,571,867 + SM_b20776 0.50 -0.4
1,571,868 - SM_b20776 0.50 -2.0
1,571,889 + SM_b20776 0.51 -1.7
1,571,889 + SM_b20776 0.51 +0.0
1,571,889 + SM_b20776 0.51 -0.7
1,571,889 + SM_b20776 0.51 -0.0
1,571,983 - SM_b20776 0.56 -0.2
1,572,034 - SM_b20776 0.59 +0.6
1,572,034 - SM_b20776 0.59 -0.3
1,572,148 + SM_b20776 0.65 -0.1
1,572,149 - SM_b20776 0.65 +0.2
1,572,255 + SM_b20776 0.70 -0.9
1,572,255 + SM_b20776 0.70 -0.2
1,572,256 - SM_b20776 0.70 -0.2
1,572,489 + SM_b20776 0.82 -0.1
1,572,550 - SM_b20776 0.85 -0.0
1,572,550 - SM_b20776 0.85 -1.1
1,572,578 + SM_b20776 0.87 -0.5
1,572,729 + -0.1
1,572,729 + -0.4
1,572,801 + -0.3
1,572,838 + -0.6
1,572,839 - +0.5
1,572,878 - -0.0

Or see this region's nucleotide sequence