Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20775 and SM_b20776 overlap by 1 nucleotides SM_b20776 and SM_b20777 are separated by 229 nucleotides
SM_b20775: SM_b20775 - TonB-dependent receptor protein, at 1,567,285 to 1,570,887
_b20775
SM_b20776: SM_b20776 - adenylate cyclase, at 1,570,887 to 1,572,836
_b20776
SM_b20777: SM_b20777 - transposase of insertion sequence ISRm19 protein, at 1,573,066 to 1,574,031
_b20777
Position (kb)
1570
1571
1572
1573 Strain fitness (log2 ratio)
-2
-1
0
1 at 1569.906 kb on + strand, within SM_b20775 at 1569.934 kb on + strand, within SM_b20775 at 1569.935 kb on - strand, within SM_b20775 at 1569.935 kb on - strand, within SM_b20775 at 1569.936 kb on + strand, within SM_b20775 at 1569.948 kb on - strand, within SM_b20775 at 1569.959 kb on - strand, within SM_b20775 at 1570.097 kb on - strand, within SM_b20775 at 1570.097 kb on - strand, within SM_b20775 at 1570.097 kb on - strand, within SM_b20775 at 1570.159 kb on + strand, within SM_b20775 at 1570.163 kb on + strand, within SM_b20775 at 1570.163 kb on + strand, within SM_b20775 at 1570.163 kb on + strand, within SM_b20775 at 1570.163 kb on + strand, within SM_b20775 at 1570.164 kb on - strand, within SM_b20775 at 1570.268 kb on - strand, within SM_b20775 at 1570.268 kb on - strand, within SM_b20775 at 1570.269 kb on + strand, within SM_b20775 at 1570.270 kb on - strand, within SM_b20775 at 1570.270 kb on - strand, within SM_b20775 at 1570.348 kb on + strand, within SM_b20775 at 1570.348 kb on + strand, within SM_b20775 at 1570.414 kb on + strand, within SM_b20775 at 1570.646 kb on - strand at 1570.646 kb on - strand at 1570.646 kb on - strand at 1570.662 kb on + strand at 1571.023 kb on - strand at 1571.023 kb on - strand at 1571.023 kb on - strand at 1571.023 kb on - strand at 1571.093 kb on + strand at 1571.419 kb on - strand, within SM_b20776 at 1571.472 kb on + strand, within SM_b20776 at 1571.520 kb on + strand, within SM_b20776 at 1571.536 kb on - strand, within SM_b20776 at 1571.536 kb on - strand, within SM_b20776 at 1571.538 kb on + strand, within SM_b20776 at 1571.539 kb on - strand, within SM_b20776 at 1571.721 kb on + strand, within SM_b20776 at 1571.722 kb on - strand, within SM_b20776 at 1571.867 kb on + strand, within SM_b20776 at 1571.868 kb on - strand, within SM_b20776 at 1571.889 kb on + strand, within SM_b20776 at 1571.889 kb on + strand, within SM_b20776 at 1571.889 kb on + strand, within SM_b20776 at 1571.889 kb on + strand, within SM_b20776 at 1571.983 kb on - strand, within SM_b20776 at 1572.034 kb on - strand, within SM_b20776 at 1572.034 kb on - strand, within SM_b20776 at 1572.148 kb on + strand, within SM_b20776 at 1572.149 kb on - strand, within SM_b20776 at 1572.255 kb on + strand, within SM_b20776 at 1572.255 kb on + strand, within SM_b20776 at 1572.256 kb on - strand, within SM_b20776 at 1572.489 kb on + strand, within SM_b20776 at 1572.550 kb on - strand, within SM_b20776 at 1572.550 kb on - strand, within SM_b20776 at 1572.578 kb on + strand, within SM_b20776 at 1572.729 kb on + strand at 1572.729 kb on + strand at 1572.801 kb on + strand at 1572.838 kb on + strand at 1572.839 kb on - strand at 1572.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 1,569,906 + SM_b20775 0.73 +0.5 1,569,934 + SM_b20775 0.74 -0.0 1,569,935 - SM_b20775 0.74 +0.1 1,569,935 - SM_b20775 0.74 -0.3 1,569,936 + SM_b20775 0.74 +0.3 1,569,948 - SM_b20775 0.74 -1.4 1,569,959 - SM_b20775 0.74 -0.8 1,570,097 - SM_b20775 0.78 +0.4 1,570,097 - SM_b20775 0.78 -0.3 1,570,097 - SM_b20775 0.78 +0.3 1,570,159 + SM_b20775 0.80 +0.3 1,570,163 + SM_b20775 0.80 -0.8 1,570,163 + SM_b20775 0.80 -2.0 1,570,163 + SM_b20775 0.80 -0.7 1,570,163 + SM_b20775 0.80 +0.3 1,570,164 - SM_b20775 0.80 +0.2 1,570,268 - SM_b20775 0.83 +0.1 1,570,268 - SM_b20775 0.83 -0.6 1,570,269 + SM_b20775 0.83 -0.1 1,570,270 - SM_b20775 0.83 -0.2 1,570,270 - SM_b20775 0.83 +0.1 1,570,348 + SM_b20775 0.85 -0.0 1,570,348 + SM_b20775 0.85 -0.0 1,570,414 + SM_b20775 0.87 -0.0 1,570,646 - +0.7 1,570,646 - -0.1 1,570,646 - -0.7 1,570,662 + -0.4 1,571,023 - +0.2 1,571,023 - +0.2 1,571,023 - +0.9 1,571,023 - -1.2 1,571,093 + -1.0 1,571,419 - SM_b20776 0.27 +0.6 1,571,472 + SM_b20776 0.30 +0.3 1,571,520 + SM_b20776 0.32 -0.4 1,571,536 - SM_b20776 0.33 -0.7 1,571,536 - SM_b20776 0.33 -0.9 1,571,538 + SM_b20776 0.33 -0.2 1,571,539 - SM_b20776 0.33 -0.1 1,571,721 + SM_b20776 0.43 -0.9 1,571,722 - SM_b20776 0.43 +0.3 1,571,867 + SM_b20776 0.50 -0.4 1,571,868 - SM_b20776 0.50 -2.0 1,571,889 + SM_b20776 0.51 -1.7 1,571,889 + SM_b20776 0.51 +0.0 1,571,889 + SM_b20776 0.51 -0.7 1,571,889 + SM_b20776 0.51 -0.0 1,571,983 - SM_b20776 0.56 -0.2 1,572,034 - SM_b20776 0.59 +0.6 1,572,034 - SM_b20776 0.59 -0.3 1,572,148 + SM_b20776 0.65 -0.1 1,572,149 - SM_b20776 0.65 +0.2 1,572,255 + SM_b20776 0.70 -0.9 1,572,255 + SM_b20776 0.70 -0.2 1,572,256 - SM_b20776 0.70 -0.2 1,572,489 + SM_b20776 0.82 -0.1 1,572,550 - SM_b20776 0.85 -0.0 1,572,550 - SM_b20776 0.85 -1.1 1,572,578 + SM_b20776 0.87 -0.5 1,572,729 + -0.1 1,572,729 + -0.4 1,572,801 + -0.3 1,572,838 + -0.6 1,572,839 - +0.5 1,572,878 - -0.0
Or see this region's nucleotide sequence