Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20362

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20360 and SM_b20361 are separated by 85 nucleotidesSM_b20361 and SM_b20362 are separated by 90 nucleotidesSM_b20362 and SM_b20363 are separated by 30 nucleotides SM_b20360: SM_b20360 - hypothetical protein, at 370,827 to 371,558 _b20360 SM_b20361: SM_b20361 - ionic voltage-gated channel protein, at 371,644 to 372,441 _b20361 SM_b20362: SM_b20362 - inositol monophosphatase, at 372,532 to 373,332 _b20362 SM_b20363: SM_b20363 - iron ABC transporter ATP-binding protein, at 373,363 to 374,424 _b20363 Position (kb) 372 373 374Strain fitness (log2 ratio) -2 -1 0 1at 371.538 kb on - strandat 371.556 kb on + strandat 371.590 kb on + strandat 371.590 kb on + strandat 371.590 kb on + strandat 371.591 kb on - strandat 371.663 kb on - strandat 371.753 kb on + strand, within SM_b20361at 371.753 kb on + strand, within SM_b20361at 371.753 kb on + strand, within SM_b20361at 371.794 kb on + strand, within SM_b20361at 371.895 kb on - strand, within SM_b20361at 371.895 kb on - strand, within SM_b20361at 371.934 kb on - strand, within SM_b20361at 371.948 kb on + strand, within SM_b20361at 372.245 kb on + strand, within SM_b20361at 372.261 kb on - strand, within SM_b20361at 372.319 kb on + strand, within SM_b20361at 372.319 kb on + strand, within SM_b20361at 372.319 kb on + strand, within SM_b20361at 372.435 kb on + strandat 372.436 kb on - strandat 372.636 kb on - strand, within SM_b20362at 372.695 kb on + strand, within SM_b20362at 372.696 kb on - strand, within SM_b20362at 372.704 kb on + strand, within SM_b20362at 372.704 kb on + strand, within SM_b20362at 372.704 kb on + strand, within SM_b20362at 372.705 kb on - strand, within SM_b20362at 372.707 kb on + strand, within SM_b20362at 372.734 kb on + strand, within SM_b20362at 372.734 kb on + strand, within SM_b20362at 372.735 kb on - strand, within SM_b20362at 372.735 kb on - strand, within SM_b20362at 372.735 kb on - strand, within SM_b20362at 372.744 kb on + strand, within SM_b20362at 372.744 kb on + strand, within SM_b20362at 372.744 kb on + strand, within SM_b20362at 372.830 kb on + strand, within SM_b20362at 372.830 kb on + strand, within SM_b20362at 372.830 kb on + strand, within SM_b20362at 372.830 kb on + strand, within SM_b20362at 372.831 kb on - strand, within SM_b20362at 372.831 kb on - strand, within SM_b20362at 372.831 kb on - strand, within SM_b20362at 373.101 kb on - strand, within SM_b20362at 373.333 kb on - strandat 373.488 kb on - strand, within SM_b20363at 373.509 kb on - strand, within SM_b20363at 373.509 kb on - strand, within SM_b20363at 373.844 kb on + strand, within SM_b20363at 374.098 kb on - strand, within SM_b20363at 374.117 kb on + strand, within SM_b20363at 374.160 kb on - strand, within SM_b20363at 374.205 kb on + strand, within SM_b20363at 374.206 kb on - strand, within SM_b20363at 374.206 kb on - strand, within SM_b20363at 374.206 kb on - strand, within SM_b20363

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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371,538 - -1.2
371,556 + -1.8
371,590 + -1.1
371,590 + -0.4
371,590 + +1.0
371,591 - +0.3
371,663 - +0.8
371,753 + SM_b20361 0.14 +0.1
371,753 + SM_b20361 0.14 -0.2
371,753 + SM_b20361 0.14 -0.6
371,794 + SM_b20361 0.19 -0.1
371,895 - SM_b20361 0.31 -0.4
371,895 - SM_b20361 0.31 +0.0
371,934 - SM_b20361 0.36 -0.7
371,948 + SM_b20361 0.38 +0.2
372,245 + SM_b20361 0.75 +0.2
372,261 - SM_b20361 0.77 -0.4
372,319 + SM_b20361 0.85 +0.1
372,319 + SM_b20361 0.85 -0.2
372,319 + SM_b20361 0.85 -0.1
372,435 + -0.8
372,436 - +0.2
372,636 - SM_b20362 0.13 -0.4
372,695 + SM_b20362 0.20 -0.0
372,696 - SM_b20362 0.20 +0.1
372,704 + SM_b20362 0.21 +0.3
372,704 + SM_b20362 0.21 +0.3
372,704 + SM_b20362 0.21 -1.2
372,705 - SM_b20362 0.22 -0.4
372,707 + SM_b20362 0.22 +0.1
372,734 + SM_b20362 0.25 -0.7
372,734 + SM_b20362 0.25 +1.3
372,735 - SM_b20362 0.25 +0.1
372,735 - SM_b20362 0.25 +0.3
372,735 - SM_b20362 0.25 +0.9
372,744 + SM_b20362 0.26 +0.4
372,744 + SM_b20362 0.26 -0.2
372,744 + SM_b20362 0.26 +0.2
372,830 + SM_b20362 0.37 +0.8
372,830 + SM_b20362 0.37 +0.4
372,830 + SM_b20362 0.37 +0.4
372,830 + SM_b20362 0.37 +0.2
372,831 - SM_b20362 0.37 +0.3
372,831 - SM_b20362 0.37 -0.1
372,831 - SM_b20362 0.37 +0.2
373,101 - SM_b20362 0.71 -0.0
373,333 - -0.8
373,488 - SM_b20363 0.12 -0.0
373,509 - SM_b20363 0.14 -0.2
373,509 - SM_b20363 0.14 -0.5
373,844 + SM_b20363 0.45 +0.9
374,098 - SM_b20363 0.69 -0.3
374,117 + SM_b20363 0.71 -1.0
374,160 - SM_b20363 0.75 -0.1
374,205 + SM_b20363 0.79 +0.5
374,206 - SM_b20363 0.79 -0.2
374,206 - SM_b20363 0.79 -0.2
374,206 - SM_b20363 0.79 +0.2

Or see this region's nucleotide sequence