Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20164 and SM_b20165 are separated by 106 nucleotides SM_b20165 and SM_b20166 overlap by 4 nucleotides SM_b20166 and SM_b20167 are separated by 73 nucleotides
SM_b20164: SM_b20164 - sensor histidine kinase, at 181,977 to 184,220
_b20164
SM_b20165: SM_b20165 - hypothetical protein, at 184,327 to 184,998
_b20165
SM_b20166: SM_b20166 - hypothetical protein, at 184,995 to 185,348
_b20166
SM_b20167: SM_b20167 - hypothetical protein, at 185,422 to 186,234
_b20167
Position (kb) 184
185 Strain fitness (log2 ratio) -1
0
1
2 at 183.510 kb on + strand, within SM_b20164 at 183.510 kb on + strand, within SM_b20164 at 183.511 kb on - strand, within SM_b20164 at 183.513 kb on - strand, within SM_b20164 at 183.568 kb on + strand, within SM_b20164 at 183.569 kb on - strand, within SM_b20164 at 183.569 kb on - strand, within SM_b20164 at 183.574 kb on + strand, within SM_b20164 at 183.574 kb on + strand, within SM_b20164 at 183.575 kb on - strand, within SM_b20164 at 183.575 kb on - strand, within SM_b20164 at 183.575 kb on - strand, within SM_b20164 at 183.595 kb on + strand, within SM_b20164 at 184.006 kb on - strand at 184.034 kb on - strand at 184.267 kb on + strand at 184.268 kb on - strand at 184.332 kb on + strand at 184.332 kb on + strand at 184.399 kb on + strand, within SM_b20165 at 184.484 kb on - strand, within SM_b20165 at 184.484 kb on - strand, within SM_b20165 at 184.576 kb on + strand, within SM_b20165 at 184.577 kb on - strand, within SM_b20165 at 184.609 kb on + strand, within SM_b20165 at 184.610 kb on - strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.699 kb on + strand, within SM_b20165 at 184.897 kb on + strand, within SM_b20165 at 184.900 kb on + strand, within SM_b20165 at 184.900 kb on + strand, within SM_b20165 at 185.106 kb on + strand, within SM_b20166 at 185.106 kb on + strand, within SM_b20166 at 185.106 kb on + strand, within SM_b20166 at 185.149 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.208 kb on + strand, within SM_b20166 at 185.209 kb on - strand, within SM_b20166 at 185.209 kb on - strand, within SM_b20166 at 185.346 kb on + strand at 185.472 kb on + strand at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.517 kb on - strand, within SM_b20167 at 185.663 kb on + strand, within SM_b20167 at 185.664 kb on - strand, within SM_b20167 at 185.664 kb on - strand, within SM_b20167 at 185.711 kb on - strand, within SM_b20167
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 183,510 + SM_b20164 0.68 -0.6 183,510 + SM_b20164 0.68 +0.3 183,511 - SM_b20164 0.68 +0.0 183,513 - SM_b20164 0.68 +2.6 183,568 + SM_b20164 0.71 -0.3 183,569 - SM_b20164 0.71 -0.0 183,569 - SM_b20164 0.71 +0.6 183,574 + SM_b20164 0.71 -0.9 183,574 + SM_b20164 0.71 +0.4 183,575 - SM_b20164 0.71 +0.5 183,575 - SM_b20164 0.71 +0.2 183,575 - SM_b20164 0.71 +0.2 183,595 + SM_b20164 0.72 -0.5 184,006 - -0.1 184,034 - +0.1 184,267 + +0.9 184,268 - +1.6 184,332 + +0.4 184,332 + +1.6 184,399 + SM_b20165 0.11 +0.2 184,484 - SM_b20165 0.23 +1.0 184,484 - SM_b20165 0.23 +0.3 184,576 + SM_b20165 0.37 -0.2 184,577 - SM_b20165 0.37 +0.0 184,609 + SM_b20165 0.42 +0.6 184,610 - SM_b20165 0.42 +0.3 184,699 + SM_b20165 0.55 -0.1 184,699 + SM_b20165 0.55 +0.4 184,699 + SM_b20165 0.55 -0.3 184,699 + SM_b20165 0.55 +1.2 184,897 + SM_b20165 0.85 +0.1 184,900 + SM_b20165 0.85 +0.9 184,900 + SM_b20165 0.85 +0.6 185,106 + SM_b20166 0.31 +0.9 185,106 + SM_b20166 0.31 +0.4 185,106 + SM_b20166 0.31 +0.1 185,149 + SM_b20166 0.44 +0.4 185,208 + SM_b20166 0.60 -0.8 185,208 + SM_b20166 0.60 +0.0 185,208 + SM_b20166 0.60 +0.7 185,209 - SM_b20166 0.60 +0.4 185,209 - SM_b20166 0.60 +0.0 185,346 + -0.0 185,472 + +0.8 185,517 - SM_b20167 0.12 +0.1 185,517 - SM_b20167 0.12 +0.2 185,517 - SM_b20167 0.12 -0.1 185,517 - SM_b20167 0.12 -0.3 185,517 - SM_b20167 0.12 +0.7 185,663 + SM_b20167 0.30 -0.2 185,664 - SM_b20167 0.30 +0.2 185,664 - SM_b20167 0.30 -0.1 185,711 - SM_b20167 0.36 -0.3
Or see this region's nucleotide sequence