Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20146

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20145 and SM_b20146 overlap by 1 nucleotidesSM_b20146 and SM_b20147 overlap by 4 nucleotides SM_b20145: SM_b20145 - hypothetical protein, at 160,206 to 161,393 _b20145 SM_b20146: SM_b20146 - pyridoxal phosphate biosynthetic protein, at 161,393 to 162,358 _b20146 SM_b20147: SM_b20147 - alcohol dehydrogenase, at 162,355 to 163,461 _b20147 Position (kb) 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 160.627 kb on - strand, within SM_b20145at 160.652 kb on + strand, within SM_b20145at 160.652 kb on + strand, within SM_b20145at 160.903 kb on - strand, within SM_b20145at 160.903 kb on - strand, within SM_b20145at 161.278 kb on - strandat 161.322 kb on + strandat 161.322 kb on + strandat 161.323 kb on - strandat 161.328 kb on + strandat 161.350 kb on - strandat 161.350 kb on - strandat 161.500 kb on + strand, within SM_b20146at 161.505 kb on - strand, within SM_b20146at 161.505 kb on - strand, within SM_b20146at 161.570 kb on + strand, within SM_b20146at 161.570 kb on + strand, within SM_b20146at 161.585 kb on - strand, within SM_b20146at 161.735 kb on - strand, within SM_b20146at 161.801 kb on + strand, within SM_b20146at 161.801 kb on + strand, within SM_b20146at 161.802 kb on - strand, within SM_b20146at 161.803 kb on + strand, within SM_b20146at 161.804 kb on - strand, within SM_b20146at 161.804 kb on - strand, within SM_b20146at 162.110 kb on + strandat 162.110 kb on + strand, within SM_b20146at 162.144 kb on - strand, within SM_b20146at 162.201 kb on + strand, within SM_b20146at 162.202 kb on - strand, within SM_b20146at 162.271 kb on + strandat 162.308 kb on + strandat 162.309 kb on - strandat 162.360 kb on + strandat 162.630 kb on - strand, within SM_b20147at 162.630 kb on - strand, within SM_b20147at 162.648 kb on - strand, within SM_b20147at 162.862 kb on + strand, within SM_b20147at 162.862 kb on + strand, within SM_b20147at 162.862 kb on + strand, within SM_b20147at 162.949 kb on - strand, within SM_b20147at 162.949 kb on - strand, within SM_b20147at 162.998 kb on - strand, within SM_b20147at 163.063 kb on + strand, within SM_b20147at 163.313 kb on + strand, within SM_b20147at 163.313 kb on + strand, within SM_b20147at 163.313 kb on + strand, within SM_b20147at 163.313 kb on + strand, within SM_b20147at 163.314 kb on - strand, within SM_b20147

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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160,627 - SM_b20145 0.35 -0.5
160,652 + SM_b20145 0.38 -0.3
160,652 + SM_b20145 0.38 -0.2
160,903 - SM_b20145 0.59 +0.1
160,903 - SM_b20145 0.59 -0.1
161,278 - +1.8
161,322 + +1.3
161,322 + -0.1
161,323 - -0.4
161,328 + +0.9
161,350 - +0.6
161,350 - +0.0
161,500 + SM_b20146 0.11 -0.1
161,505 - SM_b20146 0.12 -1.2
161,505 - SM_b20146 0.12 -1.5
161,570 + SM_b20146 0.18 +0.9
161,570 + SM_b20146 0.18 -0.3
161,585 - SM_b20146 0.20 -1.8
161,735 - SM_b20146 0.35 +1.3
161,801 + SM_b20146 0.42 -1.1
161,801 + SM_b20146 0.42 +0.5
161,802 - SM_b20146 0.42 -0.5
161,803 + SM_b20146 0.42 +0.1
161,804 - SM_b20146 0.43 -0.9
161,804 - SM_b20146 0.43 -1.0
162,110 + +1.9
162,110 + SM_b20146 0.74 +0.3
162,144 - SM_b20146 0.78 -0.5
162,201 + SM_b20146 0.84 -3.0
162,202 - SM_b20146 0.84 -0.5
162,271 + -0.4
162,308 + -0.7
162,309 - -0.4
162,360 + -0.6
162,630 - SM_b20147 0.25 -0.5
162,630 - SM_b20147 0.25 -2.5
162,648 - SM_b20147 0.26 -1.4
162,862 + SM_b20147 0.46 -0.3
162,862 + SM_b20147 0.46 -0.5
162,862 + SM_b20147 0.46 +0.2
162,949 - SM_b20147 0.54 -0.2
162,949 - SM_b20147 0.54 -0.6
162,998 - SM_b20147 0.58 -0.2
163,063 + SM_b20147 0.64 +0.6
163,313 + SM_b20147 0.87 -0.3
163,313 + SM_b20147 0.87 -1.3
163,313 + SM_b20147 0.87 -0.7
163,313 + SM_b20147 0.87 -0.1
163,314 - SM_b20147 0.87 -0.6

Or see this region's nucleotide sequence