Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06750

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06745 and RS_RS06750 are separated by 1 nucleotidesRS_RS06750 and RS_RS06755 overlap by 4 nucleotides RS_RS06745: RS_RS06745 - sulfate ABC transporter permease subunit CysT, at 1,431,550 to 1,432,464 _RS06745 RS_RS06750: RS_RS06750 - sulfate ABC transporter permease subunit CysW, at 1,432,466 to 1,433,446 _RS06750 RS_RS06755: RS_RS06755 - sulfate/thiosulfate import ATP-binding protein CysA, at 1,433,443 to 1,434,561 _RS06755 Position (kb) 1432 1433 1434Strain fitness (log2 ratio) -3 -2 -1 0 1at 1431.723 kb on + strand, within RS_RS06745at 1431.723 kb on + strand, within RS_RS06745at 1431.724 kb on - strand, within RS_RS06745at 1431.754 kb on + strand, within RS_RS06745at 1431.932 kb on - strand, within RS_RS06745at 1432.276 kb on + strand, within RS_RS06745at 1432.276 kb on + strand, within RS_RS06745at 1432.276 kb on + strand, within RS_RS06745at 1432.276 kb on + strand, within RS_RS06745at 1432.276 kb on + strand, within RS_RS06745at 1432.276 kb on + strand, within RS_RS06745at 1432.650 kb on - strand, within RS_RS06750at 1432.853 kb on + strand, within RS_RS06750at 1433.192 kb on - strand, within RS_RS06750at 1433.219 kb on + strand, within RS_RS06750at 1433.220 kb on - strand, within RS_RS06750at 1433.220 kb on - strand, within RS_RS06750at 1433.690 kb on - strand, within RS_RS06755

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,431,723 + RS_RS06745 0.19 -0.2
1,431,723 + RS_RS06745 0.19 -2.8
1,431,724 - RS_RS06745 0.19 -1.3
1,431,754 + RS_RS06745 0.22 -1.8
1,431,932 - RS_RS06745 0.42 -0.5
1,432,276 + RS_RS06745 0.79 -0.5
1,432,276 + RS_RS06745 0.79 -2.8
1,432,276 + RS_RS06745 0.79 -1.2
1,432,276 + RS_RS06745 0.79 -3.6
1,432,276 + RS_RS06745 0.79 -0.7
1,432,276 + RS_RS06745 0.79 -1.5
1,432,650 - RS_RS06750 0.19 -1.6
1,432,853 + RS_RS06750 0.39 -2.0
1,433,192 - RS_RS06750 0.74 -0.0
1,433,219 + RS_RS06750 0.77 -0.3
1,433,220 - RS_RS06750 0.77 -0.2
1,433,220 - RS_RS06750 0.77 -1.2
1,433,690 - RS_RS06755 0.22 -0.7

Or see this region's nucleotide sequence