Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37220

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
3,814,430	+		RR42_RS37215	0.70	+0.5
3,814,502	-		RR42_RS37215	0.74	+1.1
3,814,528	-		RR42_RS37215	0.76	-1.7
3,814,528	-		RR42_RS37215	0.76	+0.7
3,814,580	-		RR42_RS37215	0.79	-1.3
3,814,580	-		RR42_RS37215	0.79	-0.8
3,814,591	+		RR42_RS37215	0.79	-1.1
3,814,592	-		RR42_RS37215	0.79	-0.3
3,814,637	+		RR42_RS37215	0.82	-0.6
3,814,659	-		RR42_RS37215	0.83	+0.3
3,814,679	-		RR42_RS37215	0.84	+0.3
3,814,736	+		RR42_RS37215	0.88	-0.1
3,814,737	-		RR42_RS37215	0.88	+0.3
3,814,752	+		RR42_RS37215	0.89	+0.3
3,814,790	-				+0.1
3,814,794	-				+0.2
3,814,794	-				+0.3
3,814,794	-				+0.2
3,814,794	-				-0.4
3,814,834	-				-1.8
3,814,849	+				-0.6
3,814,850	-				+0.4
3,814,850	-				+0.1
3,814,972	+				+1.0
3,814,973	-				-0.6
3,815,018	+				-1.3
3,815,107	-				+0.4
3,815,156	+				-0.3
3,815,156	+				+0.3
3,815,184	+				-0.7
3,815,184	+				-0.5
3,815,184	+				-0.0
3,815,184	+				+1.4
3,815,185	-				-0.4
3,815,185	-				+0.3
3,815,185	-				+0.3
3,815,185	-				+0.8
3,815,269	+				+0.4
3,815,270	-				-0.8
3,815,270	-				+0.5
3,815,275	+				-0.6
3,815,302	+				-0.1
3,815,302	+				-2.0
3,815,302	+				-0.3
3,815,303	-				+0.8
3,815,315	-				+0.7
3,815,335	-				-0.0
3,815,370	+				-0.0
3,815,370	+				+0.6
3,815,370	+				-0.1
3,815,373	+				+0.0
3,815,374	-				-0.4
3,815,374	-				-0.9
3,815,507	-				-0.2
3,815,541	+		RR42_RS37220	0.11	+0.2
3,815,541	+		RR42_RS37220	0.11	+0.5
3,815,542	-		RR42_RS37220	0.11	+0.5
3,815,542	-		RR42_RS37220	0.11	-0.4
3,815,642	+		RR42_RS37220	0.21	-1.6
3,815,643	-		RR42_RS37220	0.21	-0.3
3,815,652	+		RR42_RS37220	0.21	+0.3
3,815,652	+		RR42_RS37220	0.21	+0.4
3,815,652	+		RR42_RS37220	0.21	+0.3
3,815,653	-		RR42_RS37220	0.22	+0.2
3,815,653	-		RR42_RS37220	0.22	-1.5
3,815,653	-		RR42_RS37220	0.22	+0.1
3,815,653	-		RR42_RS37220	0.22	-0.0
3,815,653	-		RR42_RS37220	0.22	+1.4
3,815,655	+		RR42_RS37220	0.22	-0.2
3,815,655	+		RR42_RS37220	0.22	-0.8
3,815,656	-		RR42_RS37220	0.22	-1.1
3,815,656	-		RR42_RS37220	0.22	-1.1
3,815,656	-		RR42_RS37220	0.22	-0.4
3,815,668	+		RR42_RS37220	0.23	-0.9
3,815,669	-		RR42_RS37220	0.23	-0.2
3,815,749	+		RR42_RS37220	0.30	+0.5
3,815,750	-		RR42_RS37220	0.30	+0.4
3,815,894	-		RR42_RS37220	0.44	-0.0
3,815,894	-		RR42_RS37220	0.44	-0.2
3,815,897	-		RR42_RS37220	0.44	-1.1
3,815,947	-		RR42_RS37220	0.49	-0.2
3,815,962	+		RR42_RS37220	0.50	-0.0
3,815,962	+		RR42_RS37220	0.50	-0.8
3,815,963	-		RR42_RS37220	0.50	-0.0
3,816,187	+		RR42_RS37220	0.71	-0.3
3,816,197	+		RR42_RS37220	0.72	+0.4
3,816,198	-		RR42_RS37220	0.72	-0.8
3,816,220	-		RR42_RS37220	0.74	-0.5
3,816,220	-		RR42_RS37220	0.74	-0.0
3,816,248	+		RR42_RS37220	0.76	+0.5
3,816,248	+		RR42_RS37220	0.76	+0.3
3,816,259	+		RR42_RS37220	0.77	+0.6
3,816,259	+		RR42_RS37220	0.77	-0.4
3,816,259	+		RR42_RS37220	0.77	-0.0
3,816,260	-		RR42_RS37220	0.77	+0.6
3,816,260	-		RR42_RS37220	0.77	+1.0
3,816,260	-		RR42_RS37220	0.77	+0.0
3,816,260	-		RR42_RS37220	0.77	-0.3
3,816,270	+		RR42_RS37220	0.78	-0.4
3,816,277	+		RR42_RS37220	0.79	-0.1
3,816,277	+		RR42_RS37220	0.79	+0.1
3,816,277	+		RR42_RS37220	0.79	-0.7
3,816,277	+		RR42_RS37220	0.79	+0.2
3,816,278	-		RR42_RS37220	0.79	-0.5
3,816,278	-		RR42_RS37220	0.79	-0.2
3,816,278	-		RR42_RS37220	0.79	-0.7
3,816,278	-		RR42_RS37220	0.79	-2.8
3,816,278	-		RR42_RS37220	0.79	-1.3
3,816,278	-		RR42_RS37220	0.79	-0.2
3,816,305	+		RR42_RS37220	0.82	-0.1
3,816,305	+		RR42_RS37220	0.82	-0.2
3,816,612	+				+1.0
3,816,612	+				+0.3
3,816,613	-				-1.3
3,816,613	-				+0.2
3,816,658	-				-0.2
3,816,658	-				+0.3
3,816,690	+				+0.6
3,816,918	+				+0.7
3,816,918	+				+2.0
3,816,919	-				-0.2
3,816,919	-				+0.1
3,816,919	-				+0.7
3,816,931	+				+0.3
3,816,955	-				+0.2
3,816,963	+				+0.2
3,817,030	+				+0.7
3,817,030	+				+0.4
3,817,030	+				+0.2
3,817,031	-				-0.4
3,817,031	-				+0.3
3,817,031	-				+0.4
3,817,031	-				+0.4
3,817,051	+				-0.9
3,817,069	-				+2.2
3,817,070	-				-0.2
3,817,139	+				+0.1
3,817,139	+				-0.0
3,817,166	-		RR42_RS37225	0.16	-1.2
3,817,185	-		RR42_RS37225	0.24	-0.6
3,817,209	+		RR42_RS37225	0.33	-0.8
3,817,209	+		RR42_RS37225	0.33	-0.7
3,817,276	+		RR42_RS37225	0.58	-0.1
3,817,284	+		RR42_RS37225	0.61	-0.5
3,817,284	+		RR42_RS37225	0.61	+0.1
3,817,284	+		RR42_RS37225	0.61	-0.0
3,817,284	+		RR42_RS37225	0.61	+0.7
3,817,285	-		RR42_RS37225	0.61	+0.2
3,817,288	-		RR42_RS37225	0.62	+0.4
3,817,288	-		RR42_RS37225	0.62	+0.5
3,817,303	+		RR42_RS37225	0.68	-1.1
3,817,304	-		RR42_RS37225	0.68	+0.3
3,817,375	+				+1.2
3,817,375	+				-0.4
3,817,376	-				-0.3
3,817,376	-				+0.1
3,817,376	-				+1.2
3,817,381	+				+0.4
3,817,381	+				-0.3
3,817,381	+				-1.4
3,817,381	+				+0.9
3,817,382	-				-2.2
3,817,382	-				-1.7
3,817,386	+				-0.1
3,817,431	+				-0.5
3,817,431	+				+0.6
3,817,431	+				-1.4
3,817,432	-				-1.2
3,817,500	+				-0.7
3,817,501	-				+1.1
3,817,501	-				+1.0