Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24335 and RR42_RS24340 are separated by 255 nucleotides RR42_RS24340 and RR42_RS24345 are separated by 137 nucleotides
RR42_RS24335: RR42_RS24335 - L-aspartate oxidase, at 787,315 to 788,925
_RS24335
RR42_RS24340: RR42_RS24340 - hypothetical protein, at 789,181 to 790,731
_RS24340
RR42_RS24345: RR42_RS24345 - membrane protein, at 790,869 to 791,981
_RS24345
Position (kb) 789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 788.196 kb on - strand, within RR42_RS24335 at 788.196 kb on - strand, within RR42_RS24335 at 788.344 kb on - strand, within RR42_RS24335 at 788.409 kb on + strand, within RR42_RS24335 at 788.409 kb on + strand, within RR42_RS24335 at 788.410 kb on - strand, within RR42_RS24335 at 788.410 kb on - strand, within RR42_RS24335 at 788.449 kb on + strand, within RR42_RS24335 at 788.449 kb on + strand, within RR42_RS24335 at 788.450 kb on - strand, within RR42_RS24335 at 788.450 kb on - strand, within RR42_RS24335 at 788.450 kb on - strand, within RR42_RS24335 at 788.590 kb on + strand, within RR42_RS24335 at 788.590 kb on + strand, within RR42_RS24335 at 788.590 kb on + strand, within RR42_RS24335 at 788.591 kb on - strand, within RR42_RS24335 at 788.591 kb on - strand, within RR42_RS24335 at 788.641 kb on + strand, within RR42_RS24335 at 788.642 kb on - strand, within RR42_RS24335 at 788.676 kb on + strand, within RR42_RS24335 at 788.677 kb on - strand, within RR42_RS24335 at 788.678 kb on + strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.733 kb on + strand, within RR42_RS24335 at 788.734 kb on - strand, within RR42_RS24335 at 788.734 kb on - strand, within RR42_RS24335 at 788.809 kb on + strand at 788.833 kb on + strand at 788.833 kb on + strand at 788.834 kb on - strand at 788.834 kb on - strand at 788.834 kb on - strand at 788.834 kb on - strand at 788.841 kb on - strand at 788.955 kb on + strand at 788.975 kb on - strand at 789.032 kb on + strand at 789.032 kb on + strand at 789.052 kb on - strand at 789.106 kb on + strand at 789.186 kb on - strand at 789.186 kb on - strand at 789.265 kb on + strand at 789.266 kb on - strand at 789.275 kb on + strand at 789.275 kb on + strand at 789.315 kb on + strand at 789.316 kb on - strand at 789.316 kb on - strand at 789.316 kb on - strand at 789.316 kb on - strand at 789.377 kb on + strand, within RR42_RS24340 at 789.377 kb on + strand, within RR42_RS24340 at 789.377 kb on + strand, within RR42_RS24340 at 789.377 kb on + strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.381 kb on + strand, within RR42_RS24340 at 789.395 kb on + strand, within RR42_RS24340 at 789.396 kb on - strand, within RR42_RS24340 at 789.543 kb on + strand, within RR42_RS24340 at 789.561 kb on + strand, within RR42_RS24340 at 789.567 kb on + strand, within RR42_RS24340 at 789.584 kb on - strand, within RR42_RS24340 at 789.663 kb on + strand, within RR42_RS24340 at 789.665 kb on + strand, within RR42_RS24340 at 789.665 kb on + strand, within RR42_RS24340 at 789.666 kb on - strand, within RR42_RS24340 at 789.736 kb on - strand, within RR42_RS24340 at 789.745 kb on + strand, within RR42_RS24340 at 789.746 kb on - strand, within RR42_RS24340 at 789.746 kb on - strand, within RR42_RS24340 at 789.758 kb on + strand, within RR42_RS24340 at 789.758 kb on + strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.768 kb on + strand, within RR42_RS24340 at 789.769 kb on - strand, within RR42_RS24340 at 789.769 kb on - strand, within RR42_RS24340 at 789.779 kb on + strand, within RR42_RS24340 at 789.779 kb on + strand, within RR42_RS24340 at 789.780 kb on - strand, within RR42_RS24340 at 789.855 kb on - strand, within RR42_RS24340 at 789.860 kb on + strand, within RR42_RS24340 at 789.861 kb on - strand, within RR42_RS24340 at 789.861 kb on - strand, within RR42_RS24340 at 789.861 kb on - strand, within RR42_RS24340 at 789.891 kb on + strand, within RR42_RS24340 at 789.892 kb on - strand, within RR42_RS24340 at 789.907 kb on + strand, within RR42_RS24340 at 789.907 kb on + strand, within RR42_RS24340 at 789.908 kb on - strand, within RR42_RS24340 at 789.915 kb on + strand, within RR42_RS24340 at 789.946 kb on + strand, within RR42_RS24340 at 789.947 kb on - strand, within RR42_RS24340 at 789.947 kb on - strand, within RR42_RS24340 at 789.985 kb on + strand, within RR42_RS24340 at 789.986 kb on - strand, within RR42_RS24340 at 790.000 kb on + strand, within RR42_RS24340 at 790.023 kb on + strand, within RR42_RS24340 at 790.023 kb on + strand, within RR42_RS24340 at 790.029 kb on + strand, within RR42_RS24340 at 790.029 kb on + strand, within RR42_RS24340 at 790.030 kb on - strand, within RR42_RS24340 at 790.030 kb on - strand, within RR42_RS24340 at 790.030 kb on - strand, within RR42_RS24340 at 790.084 kb on + strand, within RR42_RS24340 at 790.085 kb on - strand, within RR42_RS24340 at 790.123 kb on + strand, within RR42_RS24340 at 790.124 kb on - strand, within RR42_RS24340 at 790.124 kb on - strand, within RR42_RS24340 at 790.136 kb on - strand, within RR42_RS24340 at 790.235 kb on + strand, within RR42_RS24340 at 790.235 kb on + strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.356 kb on + strand, within RR42_RS24340 at 790.356 kb on + strand, within RR42_RS24340 at 790.419 kb on - strand, within RR42_RS24340 at 790.452 kb on - strand, within RR42_RS24340 at 790.452 kb on - strand, within RR42_RS24340 at 790.452 kb on - strand, within RR42_RS24340 at 790.467 kb on - strand, within RR42_RS24340 at 790.467 kb on - strand, within RR42_RS24340 at 790.467 kb on - strand, within RR42_RS24340 at 790.497 kb on - strand, within RR42_RS24340 at 790.497 kb on - strand, within RR42_RS24340 at 790.671 kb on + strand at 790.725 kb on + strand at 790.740 kb on + strand at 790.754 kb on + strand at 790.754 kb on + strand at 790.754 kb on + strand at 790.755 kb on - strand at 790.755 kb on - strand at 790.829 kb on + strand at 790.837 kb on - strand at 790.842 kb on + strand at 790.866 kb on + strand at 790.934 kb on + strand at 790.935 kb on - strand at 790.935 kb on - strand at 790.935 kb on - strand at 790.937 kb on + strand at 790.940 kb on + strand at 790.941 kb on - strand at 790.941 kb on - strand at 790.948 kb on - strand at 790.948 kb on - strand at 790.974 kb on + strand at 790.975 kb on - strand at 791.128 kb on + strand, within RR42_RS24345 at 791.128 kb on + strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.156 kb on - strand, within RR42_RS24345 at 791.210 kb on - strand, within RR42_RS24345 at 791.210 kb on - strand, within RR42_RS24345 at 791.253 kb on + strand, within RR42_RS24345 at 791.310 kb on + strand, within RR42_RS24345 at 791.311 kb on - strand, within RR42_RS24345 at 791.330 kb on - strand, within RR42_RS24345 at 791.339 kb on - strand, within RR42_RS24345 at 791.339 kb on - strand, within RR42_RS24345 at 791.358 kb on - strand, within RR42_RS24345 at 791.465 kb on + strand, within RR42_RS24345 at 791.466 kb on - strand, within RR42_RS24345 at 791.466 kb on - strand, within RR42_RS24345 at 791.468 kb on + strand, within RR42_RS24345 at 791.469 kb on - strand, within RR42_RS24345 at 791.472 kb on + strand, within RR42_RS24345 at 791.473 kb on - strand, within RR42_RS24345 at 791.473 kb on - strand, within RR42_RS24345 at 791.485 kb on + strand, within RR42_RS24345 at 791.521 kb on + strand, within RR42_RS24345 at 791.522 kb on - strand, within RR42_RS24345 at 791.522 kb on - strand, within RR42_RS24345 at 791.535 kb on - strand, within RR42_RS24345 at 791.567 kb on + strand, within RR42_RS24345 at 791.594 kb on + strand, within RR42_RS24345 at 791.595 kb on - strand, within RR42_RS24345 at 791.598 kb on + strand, within RR42_RS24345 at 791.598 kb on + strand, within RR42_RS24345 at 791.599 kb on - strand, within RR42_RS24345 at 791.599 kb on - strand, within RR42_RS24345 at 791.599 kb on - strand, within RR42_RS24345 at 791.667 kb on - strand, within RR42_RS24345 at 791.671 kb on + strand, within RR42_RS24345 at 791.671 kb on + strand, within RR42_RS24345 at 791.672 kb on - strand, within RR42_RS24345 at 791.672 kb on - strand, within RR42_RS24345 at 791.672 kb on - strand, within RR42_RS24345 at 791.686 kb on - strand, within RR42_RS24345 at 791.686 kb on - strand, within RR42_RS24345 at 791.707 kb on - strand, within RR42_RS24345
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 788,196 - RR42_RS24335 0.55 -1.0 788,196 - RR42_RS24335 0.55 -0.8 788,344 - RR42_RS24335 0.64 +0.3 788,409 + RR42_RS24335 0.68 -0.8 788,409 + RR42_RS24335 0.68 -0.2 788,410 - RR42_RS24335 0.68 -0.2 788,410 - RR42_RS24335 0.68 -0.2 788,449 + RR42_RS24335 0.70 +0.3 788,449 + RR42_RS24335 0.70 -0.3 788,450 - RR42_RS24335 0.70 +0.4 788,450 - RR42_RS24335 0.70 +1.5 788,450 - RR42_RS24335 0.70 -0.0 788,590 + RR42_RS24335 0.79 -0.4 788,590 + RR42_RS24335 0.79 +0.1 788,590 + RR42_RS24335 0.79 -0.3 788,591 - RR42_RS24335 0.79 -1.1 788,591 - RR42_RS24335 0.79 -1.9 788,641 + RR42_RS24335 0.82 -0.6 788,642 - RR42_RS24335 0.82 +0.4 788,676 + RR42_RS24335 0.84 +0.2 788,677 - RR42_RS24335 0.85 +0.1 788,678 + RR42_RS24335 0.85 +0.3 788,679 - RR42_RS24335 0.85 -0.4 788,679 - RR42_RS24335 0.85 -0.8 788,679 - RR42_RS24335 0.85 +1.8 788,679 - RR42_RS24335 0.85 +2.6 788,733 + RR42_RS24335 0.88 +0.4 788,734 - RR42_RS24335 0.88 -0.1 788,734 - RR42_RS24335 0.88 +0.7 788,809 + +0.5 788,833 + -0.8 788,833 + +1.8 788,834 - -0.1 788,834 - -1.0 788,834 - +0.3 788,834 - +0.1 788,841 - +0.9 788,955 + -0.1 788,975 - +0.8 789,032 + +0.1 789,032 + +0.2 789,052 - -0.2 789,106 + +1.1 789,186 - +1.5 789,186 - +0.2 789,265 + +0.0 789,266 - -0.9 789,275 + -0.6 789,275 + -0.6 789,315 + +0.4 789,316 - -0.9 789,316 - -0.1 789,316 - -0.0 789,316 - +0.8 789,377 + RR42_RS24340 0.13 +0.6 789,377 + RR42_RS24340 0.13 +0.4 789,377 + RR42_RS24340 0.13 +0.1 789,377 + RR42_RS24340 0.13 +0.6 789,378 - RR42_RS24340 0.13 +1.0 789,378 - RR42_RS24340 0.13 +0.4 789,378 - RR42_RS24340 0.13 +1.8 789,378 - RR42_RS24340 0.13 +0.6 789,381 + RR42_RS24340 0.13 +0.8 789,395 + RR42_RS24340 0.14 -1.1 789,396 - RR42_RS24340 0.14 +0.1 789,543 + RR42_RS24340 0.23 +0.0 789,561 + RR42_RS24340 0.25 -0.4 789,567 + RR42_RS24340 0.25 -1.8 789,584 - RR42_RS24340 0.26 -0.0 789,663 + RR42_RS24340 0.31 -0.2 789,665 + RR42_RS24340 0.31 +0.7 789,665 + RR42_RS24340 0.31 +0.0 789,666 - RR42_RS24340 0.31 +0.5 789,736 - RR42_RS24340 0.36 -0.1 789,745 + RR42_RS24340 0.36 +0.4 789,746 - RR42_RS24340 0.36 -0.1 789,746 - RR42_RS24340 0.36 +1.0 789,758 + RR42_RS24340 0.37 -0.4 789,758 + RR42_RS24340 0.37 +1.3 789,759 - RR42_RS24340 0.37 +0.4 789,759 - RR42_RS24340 0.37 +0.2 789,759 - RR42_RS24340 0.37 +0.2 789,759 - RR42_RS24340 0.37 +1.3 789,768 + RR42_RS24340 0.38 +0.4 789,769 - RR42_RS24340 0.38 +1.9 789,769 - RR42_RS24340 0.38 +0.8 789,779 + RR42_RS24340 0.39 +0.6 789,779 + RR42_RS24340 0.39 +0.2 789,780 - RR42_RS24340 0.39 -0.0 789,855 - RR42_RS24340 0.43 -0.5 789,860 + RR42_RS24340 0.44 -0.5 789,861 - RR42_RS24340 0.44 -0.0 789,861 - RR42_RS24340 0.44 -0.1 789,861 - RR42_RS24340 0.44 -1.2 789,891 + RR42_RS24340 0.46 -0.5 789,892 - RR42_RS24340 0.46 +0.2 789,907 + RR42_RS24340 0.47 +1.5 789,907 + RR42_RS24340 0.47 -1.0 789,908 - RR42_RS24340 0.47 +0.5 789,915 + RR42_RS24340 0.47 +0.3 789,946 + RR42_RS24340 0.49 +0.7 789,947 - RR42_RS24340 0.49 -0.4 789,947 - RR42_RS24340 0.49 +0.2 789,985 + RR42_RS24340 0.52 -0.2 789,986 - RR42_RS24340 0.52 +0.4 790,000 + RR42_RS24340 0.53 -0.6 790,023 + RR42_RS24340 0.54 +0.2 790,023 + RR42_RS24340 0.54 +0.8 790,029 + RR42_RS24340 0.55 +1.0 790,029 + RR42_RS24340 0.55 +0.1 790,030 - RR42_RS24340 0.55 +0.1 790,030 - RR42_RS24340 0.55 +0.8 790,030 - RR42_RS24340 0.55 -0.8 790,084 + RR42_RS24340 0.58 -0.5 790,085 - RR42_RS24340 0.58 -0.4 790,123 + RR42_RS24340 0.61 +0.5 790,124 - RR42_RS24340 0.61 -0.5 790,124 - RR42_RS24340 0.61 +0.6 790,136 - RR42_RS24340 0.62 -0.2 790,235 + RR42_RS24340 0.68 -0.0 790,235 + RR42_RS24340 0.68 +0.2 790,236 - RR42_RS24340 0.68 -0.3 790,236 - RR42_RS24340 0.68 +1.3 790,236 - RR42_RS24340 0.68 +0.0 790,236 - RR42_RS24340 0.68 +0.8 790,236 - RR42_RS24340 0.68 +0.4 790,236 - RR42_RS24340 0.68 +1.7 790,236 - RR42_RS24340 0.68 -0.2 790,356 + RR42_RS24340 0.76 -0.1 790,356 + RR42_RS24340 0.76 +0.6 790,419 - RR42_RS24340 0.80 -0.4 790,452 - RR42_RS24340 0.82 -0.8 790,452 - RR42_RS24340 0.82 -0.0 790,452 - RR42_RS24340 0.82 +0.3 790,467 - RR42_RS24340 0.83 -0.2 790,467 - RR42_RS24340 0.83 +0.5 790,467 - RR42_RS24340 0.83 -1.5 790,497 - RR42_RS24340 0.85 +0.8 790,497 - RR42_RS24340 0.85 -0.0 790,671 + -0.0 790,725 + -1.3 790,740 + -0.6 790,754 + -0.8 790,754 + -1.0 790,754 + +0.8 790,755 - +0.1 790,755 - -0.5 790,829 + -0.2 790,837 - -0.1 790,842 + -0.3 790,866 + +0.0 790,934 + -1.5 790,935 - -0.4 790,935 - -1.0 790,935 - -0.4 790,937 + +0.2 790,940 + +0.2 790,941 - -0.0 790,941 - +0.1 790,948 - -0.1 790,948 - -0.2 790,974 + -0.9 790,975 - -1.3 791,128 + RR42_RS24345 0.23 +0.4 791,128 + RR42_RS24345 0.23 -0.2 791,129 - RR42_RS24345 0.23 -1.1 791,129 - RR42_RS24345 0.23 -0.8 791,129 - RR42_RS24345 0.23 -2.1 791,129 - RR42_RS24345 0.23 -0.2 791,129 - RR42_RS24345 0.23 +0.3 791,129 - RR42_RS24345 0.23 +0.2 791,156 - RR42_RS24345 0.26 +0.3 791,210 - RR42_RS24345 0.31 +0.1 791,210 - RR42_RS24345 0.31 -3.4 791,253 + RR42_RS24345 0.35 -0.4 791,310 + RR42_RS24345 0.40 +0.1 791,311 - RR42_RS24345 0.40 -0.6 791,330 - RR42_RS24345 0.41 +0.4 791,339 - RR42_RS24345 0.42 +1.0 791,339 - RR42_RS24345 0.42 -0.1 791,358 - RR42_RS24345 0.44 -0.9 791,465 + RR42_RS24345 0.54 +0.0 791,466 - RR42_RS24345 0.54 +0.6 791,466 - RR42_RS24345 0.54 +1.1 791,468 + RR42_RS24345 0.54 -0.5 791,469 - RR42_RS24345 0.54 -2.0 791,472 + RR42_RS24345 0.54 -0.1 791,473 - RR42_RS24345 0.54 -0.7 791,473 - RR42_RS24345 0.54 +0.1 791,485 + RR42_RS24345 0.55 +0.2 791,521 + RR42_RS24345 0.59 -0.4 791,522 - RR42_RS24345 0.59 -0.5 791,522 - RR42_RS24345 0.59 +0.2 791,535 - RR42_RS24345 0.60 -1.3 791,567 + RR42_RS24345 0.63 +0.1 791,594 + RR42_RS24345 0.65 +0.7 791,595 - RR42_RS24345 0.65 +1.4 791,598 + RR42_RS24345 0.65 -0.4 791,598 + RR42_RS24345 0.65 +0.1 791,599 - RR42_RS24345 0.66 +0.2 791,599 - RR42_RS24345 0.66 +0.3 791,599 - RR42_RS24345 0.66 -0.6 791,667 - RR42_RS24345 0.72 +0.4 791,671 + RR42_RS24345 0.72 +0.1 791,671 + RR42_RS24345 0.72 -0.2 791,672 - RR42_RS24345 0.72 -1.1 791,672 - RR42_RS24345 0.72 -0.0 791,672 - RR42_RS24345 0.72 +0.3 791,686 - RR42_RS24345 0.73 -0.4 791,686 - RR42_RS24345 0.73 +0.7 791,707 - RR42_RS24345 0.75 -0.0
Or see this region's nucleotide sequence