Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21655 and RR42_RS21660 are separated by 7 nucleotides RR42_RS21660 and RR42_RS21665 are separated by 106 nucleotides RR42_RS21665 and RR42_RS21670 are separated by 99 nucleotides RR42_RS21670 and RR42_RS21675 are separated by 329 nucleotides
RR42_RS21655: RR42_RS21655 - aldehyde dehydrogenase, at 187,036 to 189,300
_RS21655
RR42_RS21660: RR42_RS21660 - MarR family transcriptional regulator, at 189,308 to 189,820
_RS21660
RR42_RS21665: RR42_RS21665 - cobalt transporter, at 189,927 to 190,907
_RS21665
RR42_RS21670: RR42_RS21670 - transcriptional regulator, at 191,007 to 191,285
_RS21670
RR42_RS21675: RR42_RS21675 - membrane protein, at 191,615 to 192,055
_RS21675
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 189.309 kb on + strand at 189.966 kb on + strand at 189.968 kb on + strand at 189.969 kb on - strand at 189.969 kb on - strand at 189.969 kb on - strand at 189.969 kb on - strand at 190.146 kb on + strand, within RR42_RS21665 at 190.146 kb on + strand, within RR42_RS21665 at 190.351 kb on + strand, within RR42_RS21665 at 190.351 kb on + strand, within RR42_RS21665 at 190.352 kb on - strand, within RR42_RS21665 at 190.468 kb on - strand, within RR42_RS21665 at 190.483 kb on - strand, within RR42_RS21665 at 190.483 kb on - strand, within RR42_RS21665 at 190.483 kb on - strand, within RR42_RS21665 at 190.485 kb on - strand, within RR42_RS21665 at 190.529 kb on - strand, within RR42_RS21665 at 190.672 kb on + strand, within RR42_RS21665 at 190.733 kb on + strand, within RR42_RS21665 at 190.733 kb on + strand, within RR42_RS21665 at 190.733 kb on + strand, within RR42_RS21665 at 190.734 kb on - strand, within RR42_RS21665 at 190.866 kb on + strand at 190.866 kb on + strand at 190.901 kb on + strand at 190.901 kb on + strand at 190.901 kb on + strand at 190.901 kb on + strand at 190.901 kb on + strand at 190.901 kb on + strand at 190.902 kb on - strand at 190.902 kb on - strand at 190.902 kb on - strand at 190.902 kb on - strand at 190.985 kb on + strand at 191.276 kb on + strand at 191.276 kb on + strand at 191.301 kb on - strand at 191.303 kb on - strand at 191.317 kb on + strand at 191.317 kb on + strand at 191.317 kb on + strand at 191.873 kb on + strand, within RR42_RS21675 at 191.874 kb on - strand, within RR42_RS21675 at 191.874 kb on - strand, within RR42_RS21675
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 189,309 + -1.6 189,966 + -0.7 189,968 + -1.6 189,969 - -1.4 189,969 - -3.5 189,969 - -2.0 189,969 - -0.6 190,146 + RR42_RS21665 0.22 -1.8 190,146 + RR42_RS21665 0.22 -2.2 190,351 + RR42_RS21665 0.43 -0.7 190,351 + RR42_RS21665 0.43 -0.8 190,352 - RR42_RS21665 0.43 -1.0 190,468 - RR42_RS21665 0.55 -1.5 190,483 - RR42_RS21665 0.57 -1.3 190,483 - RR42_RS21665 0.57 -1.3 190,483 - RR42_RS21665 0.57 -1.0 190,485 - RR42_RS21665 0.57 -2.1 190,529 - RR42_RS21665 0.61 -0.7 190,672 + RR42_RS21665 0.76 +2.0 190,733 + RR42_RS21665 0.82 -0.1 190,733 + RR42_RS21665 0.82 -0.8 190,733 + RR42_RS21665 0.82 -1.1 190,734 - RR42_RS21665 0.82 -1.1 190,866 + -0.7 190,866 + -0.9 190,901 + -1.3 190,901 + -0.4 190,901 + -0.4 190,901 + -0.1 190,901 + -0.2 190,901 + -1.1 190,902 - -1.8 190,902 - -1.1 190,902 - +1.9 190,902 - +0.3 190,985 + -0.6 191,276 + -2.3 191,276 + +0.4 191,301 - +0.0 191,303 - +0.8 191,317 + -1.5 191,317 + +0.0 191,317 + -1.2 191,873 + RR42_RS21675 0.59 -0.2 191,874 - RR42_RS21675 0.59 -0.8 191,874 - RR42_RS21675 0.59 +0.2
Or see this region's nucleotide sequence