Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20970 and RR42_RS20975 overlap by 4 nucleotides RR42_RS20975 and RR42_RS20980 are separated by 221 nucleotides
RR42_RS20970: RR42_RS20970 - hypothetical protein, at 32,187 to 33,467
_RS20970
RR42_RS20975: RR42_RS20975 - hypothetical protein, at 33,464 to 34,282
_RS20975
RR42_RS20980: RR42_RS20980 - glycosyl transferase, at 34,504 to 35,676
_RS20980
Position (kb) 33
34
35 Strain fitness (log2 ratio) -1
0
1
2
3 at 32.556 kb on + strand, within RR42_RS20970 at 32.676 kb on + strand, within RR42_RS20970 at 32.776 kb on + strand, within RR42_RS20970 at 32.826 kb on + strand, within RR42_RS20970 at 32.826 kb on + strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.871 kb on + strand, within RR42_RS20970 at 32.872 kb on - strand, within RR42_RS20970 at 33.000 kb on + strand, within RR42_RS20970 at 33.122 kb on - strand, within RR42_RS20970 at 33.122 kb on - strand, within RR42_RS20970 at 33.147 kb on + strand, within RR42_RS20970 at 33.147 kb on + strand, within RR42_RS20970 at 33.147 kb on + strand, within RR42_RS20970 at 33.148 kb on - strand, within RR42_RS20970 at 33.628 kb on + strand, within RR42_RS20975 at 33.629 kb on - strand, within RR42_RS20975 at 33.687 kb on + strand, within RR42_RS20975 at 33.688 kb on - strand, within RR42_RS20975 at 34.151 kb on + strand, within RR42_RS20975 at 34.151 kb on + strand, within RR42_RS20975 at 34.166 kb on + strand, within RR42_RS20975 at 34.166 kb on + strand, within RR42_RS20975 at 34.167 kb on - strand, within RR42_RS20975 at 34.299 kb on - strand at 34.565 kb on - strand at 34.565 kb on - strand at 34.589 kb on - strand at 34.589 kb on - strand at 34.744 kb on + strand, within RR42_RS20980 at 34.744 kb on + strand, within RR42_RS20980 at 34.768 kb on + strand, within RR42_RS20980 at 34.849 kb on + strand, within RR42_RS20980 at 34.973 kb on - strand, within RR42_RS20980 at 35.055 kb on + strand, within RR42_RS20980 at 35.059 kb on + strand, within RR42_RS20980 at 35.059 kb on + strand, within RR42_RS20980 at 35.059 kb on + strand, within RR42_RS20980 at 35.165 kb on + strand, within RR42_RS20980
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 32,556 + RR42_RS20970 0.29 +0.5 32,676 + RR42_RS20970 0.38 +1.3 32,776 + RR42_RS20970 0.46 +1.9 32,826 + RR42_RS20970 0.50 +3.2 32,826 + RR42_RS20970 0.50 +0.1 32,827 - RR42_RS20970 0.50 +0.4 32,827 - RR42_RS20970 0.50 -0.3 32,827 - RR42_RS20970 0.50 +0.9 32,871 + RR42_RS20970 0.53 -0.3 32,872 - RR42_RS20970 0.53 +0.0 33,000 + RR42_RS20970 0.63 -1.1 33,122 - RR42_RS20970 0.73 +2.0 33,122 - RR42_RS20970 0.73 -1.7 33,147 + RR42_RS20970 0.75 -0.4 33,147 + RR42_RS20970 0.75 -0.5 33,147 + RR42_RS20970 0.75 -1.1 33,148 - RR42_RS20970 0.75 +1.0 33,628 + RR42_RS20975 0.20 -0.3 33,629 - RR42_RS20975 0.20 +2.0 33,687 + RR42_RS20975 0.27 -0.5 33,688 - RR42_RS20975 0.27 -0.5 34,151 + RR42_RS20975 0.84 -0.0 34,151 + RR42_RS20975 0.84 +0.2 34,166 + RR42_RS20975 0.86 +2.0 34,166 + RR42_RS20975 0.86 -0.1 34,167 - RR42_RS20975 0.86 +0.3 34,299 - +0.1 34,565 - -0.4 34,565 - +0.0 34,589 - -0.4 34,589 - -0.2 34,744 + RR42_RS20980 0.20 -0.5 34,744 + RR42_RS20980 0.20 +0.0 34,768 + RR42_RS20980 0.23 -1.3 34,849 + RR42_RS20980 0.29 +0.4 34,973 - RR42_RS20980 0.40 +0.1 35,055 + RR42_RS20980 0.47 -0.8 35,059 + RR42_RS20980 0.47 +1.6 35,059 + RR42_RS20980 0.47 -0.0 35,059 + RR42_RS20980 0.47 +0.0 35,165 + RR42_RS20980 0.56 -0.1
Or see this region's nucleotide sequence