Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15755

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS15750 and RR42_RS15755 overlap by 4 nucleotidesRR42_RS15755 and RR42_RS15760 are separated by 73 nucleotides RR42_RS15750: RR42_RS15750 - hypothetical protein, at 3,404,261 to 3,405,469 _RS15750 RR42_RS15755: RR42_RS15755 - acetyltransferase, at 3,405,466 to 3,406,020 _RS15755 RR42_RS15760: RR42_RS15760 - hypothetical protein, at 3,406,094 to 3,407,332 _RS15760 Position (kb) 3405 3406 3407Strain fitness (log2 ratio) -1 0 1 2at 3404.520 kb on + strand, within RR42_RS15750at 3404.529 kb on + strand, within RR42_RS15750at 3404.529 kb on + strand, within RR42_RS15750at 3404.566 kb on + strand, within RR42_RS15750at 3404.566 kb on + strand, within RR42_RS15750at 3404.816 kb on + strand, within RR42_RS15750at 3404.946 kb on + strand, within RR42_RS15750at 3405.076 kb on + strand, within RR42_RS15750at 3405.356 kb on + strandat 3405.356 kb on + strandat 3405.356 kb on + strandat 3405.384 kb on + strandat 3405.384 kb on + strandat 3405.387 kb on + strandat 3405.387 kb on + strandat 3405.393 kb on + strandat 3405.393 kb on + strandat 3405.393 kb on + strandat 3405.396 kb on + strandat 3405.687 kb on - strand, within RR42_RS15755at 3405.687 kb on - strand, within RR42_RS15755at 3405.735 kb on + strand, within RR42_RS15755at 3405.794 kb on - strand, within RR42_RS15755at 3406.078 kb on + strandat 3406.078 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
3,404,520 + RR42_RS15750 0.21 -0.8
3,404,529 + RR42_RS15750 0.22 +0.4
3,404,529 + RR42_RS15750 0.22 -0.4
3,404,566 + RR42_RS15750 0.25 -0.1
3,404,566 + RR42_RS15750 0.25 +0.3
3,404,816 + RR42_RS15750 0.46 -1.4
3,404,946 + RR42_RS15750 0.57 +0.1
3,405,076 + RR42_RS15750 0.67 -0.7
3,405,356 + -0.5
3,405,356 + +0.9
3,405,356 + -0.2
3,405,384 + -0.2
3,405,384 + +0.3
3,405,387 + -0.6
3,405,387 + -0.2
3,405,393 + +1.1
3,405,393 + +1.9
3,405,393 + +0.3
3,405,396 + -1.5
3,405,687 - RR42_RS15755 0.40 -0.1
3,405,687 - RR42_RS15755 0.40 -1.4
3,405,735 + RR42_RS15755 0.48 +0.7
3,405,794 - RR42_RS15755 0.59 -1.4
3,406,078 + -0.6
3,406,078 + -0.1

Or see this region's nucleotide sequence