Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14855

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS14850 and RR42_RS14855 are separated by 107 nucleotidesRR42_RS14855 and RR42_RS14860 are separated by 22 nucleotidesRR42_RS14860 and RR42_RS14865 are separated by 209 nucleotidesRR42_RS14865 and RR42_RS14870 are separated by 25 nucleotides RR42_RS14850: RR42_RS14850 - 4-hydroxyphenylacetate permease, at 3,200,571 to 3,201,854 _RS14850 RR42_RS14855: RR42_RS14855 - monooxygenase, at 3,201,962 to 3,203,653 _RS14855 RR42_RS14860: RR42_RS14860 - hypothetical protein, at 3,203,676 to 3,203,870 _RS14860 RR42_RS14865: RR42_RS14865 - hypothetical protein, at 3,204,080 to 3,204,562 _RS14865 RR42_RS14870: RR42_RS14870 - hypothetical protein, at 3,204,588 to 3,205,784 _RS14870 Position (kb) 3201 3202 3203 3204Strain fitness (log2 ratio) -1 0 1 2at 3201.052 kb on - strand, within RR42_RS14850at 3201.306 kb on + strand, within RR42_RS14850at 3201.389 kb on + strand, within RR42_RS14850at 3201.424 kb on + strand, within RR42_RS14850at 3201.424 kb on + strand, within RR42_RS14850at 3201.424 kb on + strand, within RR42_RS14850at 3201.425 kb on - strand, within RR42_RS14850at 3201.425 kb on - strand, within RR42_RS14850at 3201.425 kb on - strand, within RR42_RS14850at 3201.541 kb on - strand, within RR42_RS14850at 3201.597 kb on + strand, within RR42_RS14850at 3201.597 kb on + strand, within RR42_RS14850at 3201.597 kb on + strand, within RR42_RS14850at 3201.756 kb on - strandat 3201.769 kb on - strandat 3201.998 kb on + strandat 3202.001 kb on + strandat 3202.008 kb on - strandat 3202.364 kb on + strand, within RR42_RS14855at 3202.365 kb on - strand, within RR42_RS14855at 3202.496 kb on + strand, within RR42_RS14855at 3202.587 kb on - strand, within RR42_RS14855at 3202.804 kb on - strand, within RR42_RS14855at 3202.804 kb on - strand, within RR42_RS14855at 3202.887 kb on - strand, within RR42_RS14855at 3202.887 kb on - strand, within RR42_RS14855at 3203.035 kb on - strand, within RR42_RS14855at 3203.140 kb on - strand, within RR42_RS14855at 3203.225 kb on + strand, within RR42_RS14855at 3203.225 kb on + strand, within RR42_RS14855at 3203.226 kb on - strand, within RR42_RS14855at 3203.330 kb on + strand, within RR42_RS14855at 3203.330 kb on + strand, within RR42_RS14855at 3203.369 kb on + strand, within RR42_RS14855at 3203.369 kb on + strand, within RR42_RS14855at 3203.559 kb on - strandat 3203.698 kb on + strand, within RR42_RS14860at 3203.725 kb on - strand, within RR42_RS14860at 3203.725 kb on - strand, within RR42_RS14860at 3203.858 kb on + strandat 3203.859 kb on - strandat 3203.868 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
3,201,052 - RR42_RS14850 0.37 +0.8
3,201,306 + RR42_RS14850 0.57 +0.1
3,201,389 + RR42_RS14850 0.64 +0.7
3,201,424 + RR42_RS14850 0.66 +0.5
3,201,424 + RR42_RS14850 0.66 -0.5
3,201,424 + RR42_RS14850 0.66 +0.9
3,201,425 - RR42_RS14850 0.67 -0.6
3,201,425 - RR42_RS14850 0.67 -1.0
3,201,425 - RR42_RS14850 0.67 -0.2
3,201,541 - RR42_RS14850 0.76 +0.3
3,201,597 + RR42_RS14850 0.80 +0.3
3,201,597 + RR42_RS14850 0.80 +0.4
3,201,597 + RR42_RS14850 0.80 +0.5
3,201,756 - -0.0
3,201,769 - -0.2
3,201,998 + -0.2
3,202,001 + +2.1
3,202,008 - -0.2
3,202,364 + RR42_RS14855 0.24 +0.4
3,202,365 - RR42_RS14855 0.24 +0.3
3,202,496 + RR42_RS14855 0.32 -0.0
3,202,587 - RR42_RS14855 0.37 -0.1
3,202,804 - RR42_RS14855 0.50 +0.1
3,202,804 - RR42_RS14855 0.50 +0.4
3,202,887 - RR42_RS14855 0.55 -0.1
3,202,887 - RR42_RS14855 0.55 -0.4
3,203,035 - RR42_RS14855 0.63 +0.6
3,203,140 - RR42_RS14855 0.70 +0.8
3,203,225 + RR42_RS14855 0.75 -0.1
3,203,225 + RR42_RS14855 0.75 +0.8
3,203,226 - RR42_RS14855 0.75 -0.9
3,203,330 + RR42_RS14855 0.81 -0.8
3,203,330 + RR42_RS14855 0.81 +0.3
3,203,369 + RR42_RS14855 0.83 -0.9
3,203,369 + RR42_RS14855 0.83 +0.1
3,203,559 - -0.8
3,203,698 + RR42_RS14860 0.11 +0.1
3,203,725 - RR42_RS14860 0.25 +0.6
3,203,725 - RR42_RS14860 0.25 +0.1
3,203,858 + -0.4
3,203,859 - -0.1
3,203,868 + -0.6

Or see this region's nucleotide sequence