Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14850 and RR42_RS14855 are separated by 107 nucleotides RR42_RS14855 and RR42_RS14860 are separated by 22 nucleotides RR42_RS14860 and RR42_RS14865 are separated by 209 nucleotides RR42_RS14865 and RR42_RS14870 are separated by 25 nucleotides
RR42_RS14850: RR42_RS14850 - 4-hydroxyphenylacetate permease, at 3,200,571 to 3,201,854
_RS14850
RR42_RS14855: RR42_RS14855 - monooxygenase, at 3,201,962 to 3,203,653
_RS14855
RR42_RS14860: RR42_RS14860 - hypothetical protein, at 3,203,676 to 3,203,870
_RS14860
RR42_RS14865: RR42_RS14865 - hypothetical protein, at 3,204,080 to 3,204,562
_RS14865
RR42_RS14870: RR42_RS14870 - hypothetical protein, at 3,204,588 to 3,205,784
_RS14870
Position (kb)
3201
3202
3203
3204 Strain fitness (log2 ratio)
-1
0
1
2 at 3201.052 kb on - strand, within RR42_RS14850 at 3201.306 kb on + strand, within RR42_RS14850 at 3201.389 kb on + strand, within RR42_RS14850 at 3201.424 kb on + strand, within RR42_RS14850 at 3201.424 kb on + strand, within RR42_RS14850 at 3201.424 kb on + strand, within RR42_RS14850 at 3201.425 kb on - strand, within RR42_RS14850 at 3201.425 kb on - strand, within RR42_RS14850 at 3201.425 kb on - strand, within RR42_RS14850 at 3201.541 kb on - strand, within RR42_RS14850 at 3201.597 kb on + strand, within RR42_RS14850 at 3201.597 kb on + strand, within RR42_RS14850 at 3201.597 kb on + strand, within RR42_RS14850 at 3201.756 kb on - strand at 3201.769 kb on - strand at 3201.998 kb on + strand at 3202.001 kb on + strand at 3202.008 kb on - strand at 3202.364 kb on + strand, within RR42_RS14855 at 3202.365 kb on - strand, within RR42_RS14855 at 3202.496 kb on + strand, within RR42_RS14855 at 3202.587 kb on - strand, within RR42_RS14855 at 3202.804 kb on - strand, within RR42_RS14855 at 3202.804 kb on - strand, within RR42_RS14855 at 3202.887 kb on - strand, within RR42_RS14855 at 3202.887 kb on - strand, within RR42_RS14855 at 3203.035 kb on - strand, within RR42_RS14855 at 3203.140 kb on - strand, within RR42_RS14855 at 3203.225 kb on + strand, within RR42_RS14855 at 3203.225 kb on + strand, within RR42_RS14855 at 3203.226 kb on - strand, within RR42_RS14855 at 3203.330 kb on + strand, within RR42_RS14855 at 3203.330 kb on + strand, within RR42_RS14855 at 3203.369 kb on + strand, within RR42_RS14855 at 3203.369 kb on + strand, within RR42_RS14855 at 3203.559 kb on - strand at 3203.698 kb on + strand, within RR42_RS14860 at 3203.725 kb on - strand, within RR42_RS14860 at 3203.725 kb on - strand, within RR42_RS14860 at 3203.858 kb on + strand at 3203.859 kb on - strand at 3203.868 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,201,052 - RR42_RS14850 0.37 +0.8 3,201,306 + RR42_RS14850 0.57 +0.1 3,201,389 + RR42_RS14850 0.64 +0.7 3,201,424 + RR42_RS14850 0.66 +0.5 3,201,424 + RR42_RS14850 0.66 -0.5 3,201,424 + RR42_RS14850 0.66 +0.9 3,201,425 - RR42_RS14850 0.67 -0.6 3,201,425 - RR42_RS14850 0.67 -1.0 3,201,425 - RR42_RS14850 0.67 -0.2 3,201,541 - RR42_RS14850 0.76 +0.3 3,201,597 + RR42_RS14850 0.80 +0.3 3,201,597 + RR42_RS14850 0.80 +0.4 3,201,597 + RR42_RS14850 0.80 +0.5 3,201,756 - -0.0 3,201,769 - -0.2 3,201,998 + -0.2 3,202,001 + +2.1 3,202,008 - -0.2 3,202,364 + RR42_RS14855 0.24 +0.4 3,202,365 - RR42_RS14855 0.24 +0.3 3,202,496 + RR42_RS14855 0.32 -0.0 3,202,587 - RR42_RS14855 0.37 -0.1 3,202,804 - RR42_RS14855 0.50 +0.1 3,202,804 - RR42_RS14855 0.50 +0.4 3,202,887 - RR42_RS14855 0.55 -0.1 3,202,887 - RR42_RS14855 0.55 -0.4 3,203,035 - RR42_RS14855 0.63 +0.6 3,203,140 - RR42_RS14855 0.70 +0.8 3,203,225 + RR42_RS14855 0.75 -0.1 3,203,225 + RR42_RS14855 0.75 +0.8 3,203,226 - RR42_RS14855 0.75 -0.9 3,203,330 + RR42_RS14855 0.81 -0.8 3,203,330 + RR42_RS14855 0.81 +0.3 3,203,369 + RR42_RS14855 0.83 -0.9 3,203,369 + RR42_RS14855 0.83 +0.1 3,203,559 - -0.8 3,203,698 + RR42_RS14860 0.11 +0.1 3,203,725 - RR42_RS14860 0.25 +0.6 3,203,725 - RR42_RS14860 0.25 +0.1 3,203,858 + -0.4 3,203,859 - -0.1 3,203,868 + -0.6
Or see this region's nucleotide sequence