Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13125

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13120 and RR42_RS13125 are separated by 224 nucleotidesRR42_RS13125 and RR42_RS13130 are separated by 172 nucleotidesRR42_RS13130 and RR42_RS13135 are separated by 85 nucleotides RR42_RS13120: RR42_RS13120 - ribosome-associated GTPase EngA, at 2,826,421 to 2,827,764 _RS13120 RR42_RS13125: RR42_RS13125 - pyrrolo-quinoline quinone, at 2,827,989 to 2,829,110 _RS13125 RR42_RS13130: RR42_RS13130 - membrane protein, at 2,829,283 to 2,829,915 _RS13130 RR42_RS13135: RR42_RS13135 - histidyl-tRNA synthetase, at 2,830,001 to 2,831,389 _RS13135 Position (kb) 2827 2828 2829 2830Strain fitness (log2 ratio) -2 -1 0 1at 2828.134 kb on - strand, within RR42_RS13125at 2828.138 kb on - strand, within RR42_RS13125at 2828.138 kb on - strand, within RR42_RS13125at 2828.147 kb on - strand, within RR42_RS13125at 2828.201 kb on - strand, within RR42_RS13125at 2828.618 kb on - strand, within RR42_RS13125at 2828.618 kb on - strand, within RR42_RS13125at 2828.921 kb on - strand, within RR42_RS13125at 2829.435 kb on - strand, within RR42_RS13130at 2829.615 kb on - strand, within RR42_RS13130at 2829.747 kb on - strand, within RR42_RS13130at 2829.747 kb on - strand, within RR42_RS13130at 2829.909 kb on - strandat 2829.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,828,134 - RR42_RS13125 0.13 -0.7
2,828,138 - RR42_RS13125 0.13 -0.5
2,828,138 - RR42_RS13125 0.13 -2.1
2,828,147 - RR42_RS13125 0.14 -0.4
2,828,201 - RR42_RS13125 0.19 -1.3
2,828,618 - RR42_RS13125 0.56 -0.2
2,828,618 - RR42_RS13125 0.56 +0.1
2,828,921 - RR42_RS13125 0.83 -0.1
2,829,435 - RR42_RS13130 0.24 +1.1
2,829,615 - RR42_RS13130 0.52 +0.9
2,829,747 - RR42_RS13130 0.73 +0.3
2,829,747 - RR42_RS13130 0.73 +0.2
2,829,909 - -1.0
2,829,944 - -0.5

Or see this region's nucleotide sequence