Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06435 and RR42_RS06440 are separated by 86 nucleotides RR42_RS06440 and RR42_RS06445 are separated by 71 nucleotides RR42_RS06445 and RR42_RS06450 are separated by 158 nucleotides
RR42_RS06435: RR42_RS06435 - 2-hydroxyacid dehydrogenase, at 1,408,551 to 1,409,972
_RS06435
RR42_RS06440: RR42_RS06440 - membrane protein, at 1,410,059 to 1,410,433
_RS06440
RR42_RS06445: RR42_RS06445 - NAD(P)H-quinone oxidoreductase, at 1,410,505 to 1,411,110
_RS06445
RR42_RS06450: RR42_RS06450 - membrane protein, at 1,411,269 to 1,412,642
_RS06450
Position (kb) 1410
1411
1412 Strain fitness (log2 ratio) -1
0
1 at 1409.736 kb on + strand, within RR42_RS06435 at 1409.736 kb on + strand, within RR42_RS06435 at 1409.854 kb on + strand at 1409.879 kb on - strand at 1410.105 kb on + strand, within RR42_RS06440 at 1410.105 kb on + strand, within RR42_RS06440 at 1410.106 kb on - strand, within RR42_RS06440 at 1410.117 kb on + strand, within RR42_RS06440 at 1410.261 kb on + strand, within RR42_RS06440 at 1410.681 kb on - strand, within RR42_RS06445 at 1410.845 kb on + strand, within RR42_RS06445 at 1410.846 kb on - strand, within RR42_RS06445 at 1410.846 kb on - strand, within RR42_RS06445 at 1411.085 kb on + strand at 1411.086 kb on - strand at 1411.086 kb on - strand at 1411.086 kb on - strand at 1411.086 kb on - strand at 1411.086 kb on - strand at 1411.089 kb on - strand at 1411.089 kb on - strand at 1411.089 kb on - strand at 1411.097 kb on - strand at 1411.219 kb on + strand at 1411.219 kb on + strand at 1411.219 kb on + strand at 1411.219 kb on + strand at 1411.220 kb on - strand at 1411.222 kb on + strand at 1411.223 kb on - strand at 1411.224 kb on + strand at 1411.224 kb on + strand at 1411.224 kb on + strand at 1411.321 kb on + strand at 1411.529 kb on + strand, within RR42_RS06450 at 1411.530 kb on - strand, within RR42_RS06450 at 1411.545 kb on + strand, within RR42_RS06450 at 1411.546 kb on - strand, within RR42_RS06450 at 1411.546 kb on - strand, within RR42_RS06450 at 1411.788 kb on + strand, within RR42_RS06450 at 1411.789 kb on - strand, within RR42_RS06450 at 1411.872 kb on + strand, within RR42_RS06450 at 1411.873 kb on - strand, within RR42_RS06450 at 1411.995 kb on + strand, within RR42_RS06450 at 1411.995 kb on + strand, within RR42_RS06450 at 1411.995 kb on + strand, within RR42_RS06450 at 1411.996 kb on - strand, within RR42_RS06450 at 1411.996 kb on - strand, within RR42_RS06450 at 1412.008 kb on - strand, within RR42_RS06450 at 1412.049 kb on + strand, within RR42_RS06450 at 1412.049 kb on + strand, within RR42_RS06450
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,409,736 + RR42_RS06435 0.83 +0.3 1,409,736 + RR42_RS06435 0.83 -0.9 1,409,854 + -0.9 1,409,879 - +0.1 1,410,105 + RR42_RS06440 0.12 -0.1 1,410,105 + RR42_RS06440 0.12 -0.3 1,410,106 - RR42_RS06440 0.13 -1.3 1,410,117 + RR42_RS06440 0.15 -0.1 1,410,261 + RR42_RS06440 0.54 +0.5 1,410,681 - RR42_RS06445 0.29 +0.3 1,410,845 + RR42_RS06445 0.56 +0.8 1,410,846 - RR42_RS06445 0.56 +0.9 1,410,846 - RR42_RS06445 0.56 +0.0 1,411,085 + +1.2 1,411,086 - +0.3 1,411,086 - -0.9 1,411,086 - +1.2 1,411,086 - -1.6 1,411,086 - -0.3 1,411,089 - +0.1 1,411,089 - +0.4 1,411,089 - +0.1 1,411,097 - -1.6 1,411,219 + -0.7 1,411,219 + +0.3 1,411,219 + -0.5 1,411,219 + -0.2 1,411,220 - -0.9 1,411,222 + -0.6 1,411,223 - -1.3 1,411,224 + -0.0 1,411,224 + +0.4 1,411,224 + -0.3 1,411,321 + +0.0 1,411,529 + RR42_RS06450 0.19 +0.8 1,411,530 - RR42_RS06450 0.19 -0.4 1,411,545 + RR42_RS06450 0.20 -0.7 1,411,546 - RR42_RS06450 0.20 -0.2 1,411,546 - RR42_RS06450 0.20 +0.2 1,411,788 + RR42_RS06450 0.38 +0.4 1,411,789 - RR42_RS06450 0.38 -0.2 1,411,872 + RR42_RS06450 0.44 -0.7 1,411,873 - RR42_RS06450 0.44 +0.4 1,411,995 + RR42_RS06450 0.53 +0.2 1,411,995 + RR42_RS06450 0.53 +0.0 1,411,995 + RR42_RS06450 0.53 -0.3 1,411,996 - RR42_RS06450 0.53 -0.7 1,411,996 - RR42_RS06450 0.53 -1.3 1,412,008 - RR42_RS06450 0.54 +0.5 1,412,049 + RR42_RS06450 0.57 +0.2 1,412,049 + RR42_RS06450 0.57 -0.7
Or see this region's nucleotide sequence