Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03295 and RR42_RS03300 are separated by 44 nucleotides RR42_RS03300 and RR42_RS03305 are separated by 9 nucleotides
RR42_RS03295: RR42_RS03295 - histidine kinase, at 728,520 to 729,947
_RS03295
RR42_RS03300: RR42_RS03300 - RND transporter, at 729,992 to 731,482
_RS03300
RR42_RS03305: RR42_RS03305 - acriflavin resistance protein, at 731,492 to 734,788
_RS03305
Position (kb) 729
730
731
732 Strain fitness (log2 ratio) -2
-1
0
1
2 at 729.237 kb on + strand, within RR42_RS03295 at 729.238 kb on - strand, within RR42_RS03295 at 729.649 kb on - strand, within RR42_RS03295 at 729.651 kb on - strand, within RR42_RS03295 at 729.651 kb on - strand, within RR42_RS03295 at 729.704 kb on - strand, within RR42_RS03295 at 729.707 kb on - strand, within RR42_RS03295 at 729.994 kb on - strand at 729.994 kb on - strand at 730.108 kb on - strand at 730.118 kb on + strand at 730.119 kb on - strand at 730.131 kb on + strand at 730.132 kb on - strand at 730.132 kb on - strand at 730.132 kb on - strand at 730.172 kb on + strand, within RR42_RS03300 at 730.172 kb on + strand, within RR42_RS03300 at 730.173 kb on - strand, within RR42_RS03300 at 730.527 kb on + strand, within RR42_RS03300 at 730.857 kb on + strand, within RR42_RS03300 at 730.918 kb on - strand, within RR42_RS03300 at 730.918 kb on - strand, within RR42_RS03300 at 731.426 kb on + strand at 731.470 kb on + strand at 731.584 kb on - strand at 731.976 kb on + strand, within RR42_RS03305 at 731.976 kb on + strand, within RR42_RS03305 at 731.976 kb on + strand, within RR42_RS03305 at 731.976 kb on + strand, within RR42_RS03305 at 731.977 kb on - strand, within RR42_RS03305 at 731.977 kb on - strand, within RR42_RS03305 at 731.977 kb on - strand, within RR42_RS03305 at 731.986 kb on - strand, within RR42_RS03305 at 731.986 kb on - strand, within RR42_RS03305 at 732.005 kb on - strand, within RR42_RS03305 at 732.006 kb on + strand, within RR42_RS03305 at 732.006 kb on + strand, within RR42_RS03305 at 732.006 kb on + strand, within RR42_RS03305 at 732.007 kb on - strand, within RR42_RS03305 at 732.007 kb on - strand, within RR42_RS03305 at 732.007 kb on - strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.297 kb on + strand, within RR42_RS03305 at 732.298 kb on - strand, within RR42_RS03305 at 732.298 kb on - strand, within RR42_RS03305 at 732.298 kb on - strand, within RR42_RS03305 at 732.298 kb on - strand, within RR42_RS03305 at 732.298 kb on - strand, within RR42_RS03305 at 732.302 kb on - strand, within RR42_RS03305 at 732.360 kb on + strand, within RR42_RS03305 at 732.378 kb on + strand, within RR42_RS03305 at 732.379 kb on - strand, within RR42_RS03305 at 732.379 kb on - strand, within RR42_RS03305
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 729,237 + RR42_RS03295 0.50 +1.2 729,238 - RR42_RS03295 0.50 -0.2 729,649 - RR42_RS03295 0.79 -0.1 729,651 - RR42_RS03295 0.79 -0.5 729,651 - RR42_RS03295 0.79 -0.5 729,704 - RR42_RS03295 0.83 +1.1 729,707 - RR42_RS03295 0.83 +0.1 729,994 - +0.5 729,994 - +0.0 730,108 - -0.7 730,118 + +0.6 730,119 - -1.4 730,131 + +0.4 730,132 - +0.5 730,132 - +0.3 730,132 - +0.2 730,172 + RR42_RS03300 0.12 -0.6 730,172 + RR42_RS03300 0.12 +0.3 730,173 - RR42_RS03300 0.12 -0.8 730,527 + RR42_RS03300 0.36 -0.3 730,857 + RR42_RS03300 0.58 -1.4 730,918 - RR42_RS03300 0.62 -1.1 730,918 - RR42_RS03300 0.62 -0.1 731,426 + -0.4 731,470 + +0.9 731,584 - +0.4 731,976 + RR42_RS03305 0.15 +0.4 731,976 + RR42_RS03305 0.15 -0.1 731,976 + RR42_RS03305 0.15 -1.3 731,976 + RR42_RS03305 0.15 +0.5 731,977 - RR42_RS03305 0.15 +1.5 731,977 - RR42_RS03305 0.15 -0.1 731,977 - RR42_RS03305 0.15 -0.5 731,986 - RR42_RS03305 0.15 -2.3 731,986 - RR42_RS03305 0.15 -0.2 732,005 - RR42_RS03305 0.16 -0.1 732,006 + RR42_RS03305 0.16 -1.5 732,006 + RR42_RS03305 0.16 -0.3 732,006 + RR42_RS03305 0.16 -0.5 732,007 - RR42_RS03305 0.16 -0.3 732,007 - RR42_RS03305 0.16 +0.5 732,007 - RR42_RS03305 0.16 +1.8 732,297 + RR42_RS03305 0.24 +0.5 732,297 + RR42_RS03305 0.24 +1.1 732,297 + RR42_RS03305 0.24 -0.5 732,297 + RR42_RS03305 0.24 -0.5 732,297 + RR42_RS03305 0.24 +0.5 732,297 + RR42_RS03305 0.24 +0.4 732,298 - RR42_RS03305 0.24 +0.3 732,298 - RR42_RS03305 0.24 +0.1 732,298 - RR42_RS03305 0.24 -0.9 732,298 - RR42_RS03305 0.24 -0.3 732,298 - RR42_RS03305 0.24 -1.8 732,302 - RR42_RS03305 0.25 -0.6 732,360 + RR42_RS03305 0.26 +0.5 732,378 + RR42_RS03305 0.27 -0.1 732,379 - RR42_RS03305 0.27 +0.8 732,379 - RR42_RS03305 0.27 -0.1
Or see this region's nucleotide sequence