Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03060

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03050 and RR42_RS03055 are separated by 300 nucleotidesRR42_RS03055 and RR42_RS03060 are separated by 204 nucleotidesRR42_RS03060 and RR42_RS03065 are separated by 264 nucleotidesRR42_RS03065 and RR42_RS03070 overlap by 4 nucleotides RR42_RS03050: RR42_RS03050 - energy transducer TonB, at 675,128 to 675,868 _RS03050 RR42_RS03055: RR42_RS03055 - tRNA-Met, at 676,169 to 676,245 _RS03055 RR42_RS03060: RR42_RS03060 - MFS transporter, at 676,450 to 678,150 _RS03060 RR42_RS03065: RR42_RS03065 - membrane protein, at 678,415 to 678,732 _RS03065 RR42_RS03070: RR42_RS03070 - histidine kinase, at 678,729 to 680,285 _RS03070 Position (kb) 676 677 678 679Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 675.762 kb on + strand, within RR42_RS03050at 675.762 kb on + strand, within RR42_RS03050at 675.766 kb on - strand, within RR42_RS03050at 675.766 kb on - strand, within RR42_RS03050at 675.766 kb on - strand, within RR42_RS03050at 675.846 kb on + strandat 675.847 kb on - strandat 675.847 kb on - strandat 675.900 kb on + strandat 675.900 kb on + strandat 675.900 kb on + strandat 675.900 kb on + strandat 675.900 kb on + strandat 675.901 kb on - strandat 675.901 kb on - strandat 675.901 kb on - strandat 675.901 kb on - strandat 676.004 kb on + strandat 676.004 kb on + strandat 676.004 kb on + strandat 676.004 kb on + strandat 676.005 kb on - strandat 676.167 kb on + strandat 676.168 kb on - strandat 676.463 kb on + strandat 676.463 kb on + strandat 676.463 kb on + strandat 676.464 kb on - strandat 676.464 kb on - strandat 676.550 kb on + strandat 676.551 kb on - strandat 676.553 kb on + strandat 676.553 kb on + strandat 676.631 kb on + strand, within RR42_RS03060at 676.632 kb on - strand, within RR42_RS03060at 676.632 kb on - strand, within RR42_RS03060at 676.653 kb on - strand, within RR42_RS03060at 676.653 kb on - strand, within RR42_RS03060at 676.703 kb on + strand, within RR42_RS03060at 676.704 kb on - strand, within RR42_RS03060at 676.718 kb on + strand, within RR42_RS03060at 676.719 kb on - strand, within RR42_RS03060at 676.964 kb on + strand, within RR42_RS03060at 676.965 kb on - strand, within RR42_RS03060at 676.965 kb on - strand, within RR42_RS03060at 677.127 kb on - strand, within RR42_RS03060at 677.157 kb on - strand, within RR42_RS03060at 677.157 kb on - strand, within RR42_RS03060at 677.330 kb on + strand, within RR42_RS03060at 677.330 kb on + strand, within RR42_RS03060at 677.507 kb on + strand, within RR42_RS03060at 677.508 kb on - strand, within RR42_RS03060at 677.508 kb on - strand, within RR42_RS03060at 677.508 kb on - strand, within RR42_RS03060at 677.660 kb on + strand, within RR42_RS03060at 677.660 kb on + strand, within RR42_RS03060at 677.660 kb on + strand, within RR42_RS03060at 677.660 kb on + strand, within RR42_RS03060at 677.661 kb on - strand, within RR42_RS03060at 677.661 kb on - strand, within RR42_RS03060at 677.661 kb on - strand, within RR42_RS03060at 677.699 kb on + strand, within RR42_RS03060at 677.699 kb on + strand, within RR42_RS03060at 677.700 kb on - strand, within RR42_RS03060at 677.700 kb on - strand, within RR42_RS03060at 677.700 kb on - strand, within RR42_RS03060at 677.861 kb on + strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 677.862 kb on - strand, within RR42_RS03060at 678.264 kb on - strandat 678.298 kb on + strandat 678.313 kb on + strandat 678.313 kb on + strandat 678.313 kb on + strandat 678.314 kb on - strandat 678.314 kb on - strandat 678.314 kb on - strandat 678.416 kb on + strandat 678.416 kb on + strandat 678.417 kb on - strandat 678.497 kb on + strand, within RR42_RS03065at 678.497 kb on + strand, within RR42_RS03065at 678.497 kb on + strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.498 kb on - strand, within RR42_RS03065at 678.519 kb on - strand, within RR42_RS03065at 678.635 kb on - strand, within RR42_RS03065at 678.806 kb on - strandat 678.806 kb on - strandat 678.911 kb on - strand, within RR42_RS03070at 678.979 kb on + strand, within RR42_RS03070at 679.043 kb on - strand, within RR42_RS03070

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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675,762 + RR42_RS03050 0.86 -0.5
675,762 + RR42_RS03050 0.86 -0.5
675,766 - RR42_RS03050 0.86 -1.4
675,766 - RR42_RS03050 0.86 -0.8
675,766 - RR42_RS03050 0.86 +0.5
675,846 + +0.2
675,847 - +2.9
675,847 - +2.5
675,900 + +0.4
675,900 + -0.5
675,900 + +0.8
675,900 + +0.5
675,900 + +0.3
675,901 - +0.2
675,901 - -0.1
675,901 - +0.4
675,901 - -0.2
676,004 + -0.0
676,004 + -1.6
676,004 + -0.6
676,004 + +0.4
676,005 - -0.0
676,167 + -1.2
676,168 - -0.1
676,463 + -0.2
676,463 + -0.1
676,463 + -0.6
676,464 - -0.7
676,464 - -0.5
676,550 + -1.1
676,551 - -0.9
676,553 + -0.7
676,553 + -1.0
676,631 + RR42_RS03060 0.11 -1.5
676,632 - RR42_RS03060 0.11 -2.2
676,632 - RR42_RS03060 0.11 -0.7
676,653 - RR42_RS03060 0.12 -1.2
676,653 - RR42_RS03060 0.12 -2.3
676,703 + RR42_RS03060 0.15 -1.9
676,704 - RR42_RS03060 0.15 -2.5
676,718 + RR42_RS03060 0.16 -1.2
676,719 - RR42_RS03060 0.16 -1.9
676,964 + RR42_RS03060 0.30 -1.3
676,965 - RR42_RS03060 0.30 -1.0
676,965 - RR42_RS03060 0.30 -1.1
677,127 - RR42_RS03060 0.40 +0.3
677,157 - RR42_RS03060 0.42 -1.0
677,157 - RR42_RS03060 0.42 +0.5
677,330 + RR42_RS03060 0.52 -1.8
677,330 + RR42_RS03060 0.52 -2.6
677,507 + RR42_RS03060 0.62 -0.8
677,508 - RR42_RS03060 0.62 -0.1
677,508 - RR42_RS03060 0.62 -1.4
677,508 - RR42_RS03060 0.62 -2.4
677,660 + RR42_RS03060 0.71 -0.3
677,660 + RR42_RS03060 0.71 -0.9
677,660 + RR42_RS03060 0.71 -1.4
677,660 + RR42_RS03060 0.71 -0.7
677,661 - RR42_RS03060 0.71 -1.4
677,661 - RR42_RS03060 0.71 -0.5
677,661 - RR42_RS03060 0.71 -1.7
677,699 + RR42_RS03060 0.73 -2.7
677,699 + RR42_RS03060 0.73 +0.9
677,700 - RR42_RS03060 0.73 -1.4
677,700 - RR42_RS03060 0.73 -1.9
677,700 - RR42_RS03060 0.73 +0.0
677,861 + RR42_RS03060 0.83 -0.1
677,862 - RR42_RS03060 0.83 -0.7
677,862 - RR42_RS03060 0.83 -0.8
677,862 - RR42_RS03060 0.83 -0.4
677,862 - RR42_RS03060 0.83 -2.8
678,264 - -0.6
678,298 + -0.2
678,313 + -0.3
678,313 + -2.8
678,313 + +0.1
678,314 - -0.8
678,314 - -0.4
678,314 - -0.1
678,416 + +0.1
678,416 + +0.2
678,417 - -1.0
678,497 + RR42_RS03065 0.26 -0.6
678,497 + RR42_RS03065 0.26 -0.7
678,497 + RR42_RS03065 0.26 +0.7
678,498 - RR42_RS03065 0.26 -2.1
678,498 - RR42_RS03065 0.26 -1.9
678,498 - RR42_RS03065 0.26 -0.3
678,498 - RR42_RS03065 0.26 -1.4
678,498 - RR42_RS03065 0.26 -0.8
678,498 - RR42_RS03065 0.26 +0.0
678,519 - RR42_RS03065 0.33 -1.0
678,635 - RR42_RS03065 0.69 -1.0
678,806 - -2.9
678,806 - -0.1
678,911 - RR42_RS03070 0.12 -1.6
678,979 + RR42_RS03070 0.16 -1.3
679,043 - RR42_RS03070 0.20 -0.7

Or see this region's nucleotide sequence