Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01375

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01370 and RR42_RS01375 are separated by 286 nucleotidesRR42_RS01375 and RR42_RS01380 are separated by 129 nucleotidesRR42_RS01380 and RR42_RS01385 are separated by 62 nucleotides RR42_RS01370: RR42_RS01370 - phosphomethylpyrimidine kinase, at 310,365 to 311,195 _RS01370 RR42_RS01375: RR42_RS01375 - S-adenosyl-L-homocysteine hydrolase, at 311,482 to 312,915 _RS01375 RR42_RS01380: RR42_RS01380 - membrane protein, at 313,045 to 313,398 _RS01380 RR42_RS01385: RR42_RS01385 - 5,10-methylenetetrahydrofolate reductase, at 313,461 to 314,291 _RS01385 Position (kb) 311 312 313Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 311.259 kb on + strandat 311.259 kb on + strandat 311.358 kb on + strandat 311.358 kb on + strandat 311.358 kb on + strandat 313.173 kb on + strand, within RR42_RS01380at 313.173 kb on + strand, within RR42_RS01380at 313.174 kb on - strand, within RR42_RS01380at 313.174 kb on - strand, within RR42_RS01380at 313.174 kb on - strand, within RR42_RS01380at 313.340 kb on - strand, within RR42_RS01380at 313.717 kb on - strand, within RR42_RS01385at 313.875 kb on + strand, within RR42_RS01385

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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311,259 + -0.3
311,259 + -0.7
311,358 + +0.1
311,358 + +0.3
311,358 + +0.3
313,173 + RR42_RS01380 0.36 +0.1
313,173 + RR42_RS01380 0.36 +0.6
313,174 - RR42_RS01380 0.36 -3.3
313,174 - RR42_RS01380 0.36 -3.3
313,174 - RR42_RS01380 0.36 -5.6
313,340 - RR42_RS01380 0.83 -2.6
313,717 - RR42_RS01385 0.31 -4.6
313,875 + RR42_RS01385 0.50 -2.1

Or see this region's nucleotide sequence