Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14230

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,170,411	+		LRK54_RS14220	0.77	+0.3
3,170,411	+		LRK54_RS14220	0.77	-1.6
3,170,411	+		LRK54_RS14220	0.77	-0.1
3,170,411	+		LRK54_RS14220	0.77	+0.8
3,170,411	+		LRK54_RS14220	0.77	-0.6
3,170,411	+		LRK54_RS14220	0.77	+0.1
3,170,411	+		LRK54_RS14220	0.77	+0.2
3,170,411	+		LRK54_RS14220	0.77	-0.2
3,170,412	-		LRK54_RS14220	0.77	-0.5
3,170,412	-		LRK54_RS14220	0.77	+1.9
3,170,412	-		LRK54_RS14220	0.77	-0.7
3,170,548	+				-0.3
3,170,548	+				-1.1
3,170,548	+				-1.1
3,170,548	+				-0.1
3,170,548	+				-0.2
3,170,549	-				-0.9
3,170,549	-				-0.2
3,170,549	-				-0.9
3,170,549	-				+0.8
3,170,549	-				-0.2
3,170,549	-				+0.0
3,170,549	-				-1.0
3,170,549	-				+0.4
3,170,549	-				+0.4
3,170,549	-				-0.2
3,170,549	-				-0.1
3,170,550	+				-1.0
3,170,551	-				-1.1
3,170,551	-				-2.2
3,170,610	+				+0.6
3,170,611	-				-0.9
3,170,771	+		LRK54_RS14225	0.31	-1.0
3,170,771	+		LRK54_RS14225	0.31	+0.2
3,170,772	-		LRK54_RS14225	0.31	-0.4
3,170,772	-		LRK54_RS14225	0.31	-1.0
3,170,787	+		LRK54_RS14225	0.33	-1.1
3,170,787	+		LRK54_RS14225	0.33	-1.2
3,170,787	+		LRK54_RS14225	0.33	+1.7
3,170,787	+		LRK54_RS14225	0.33	+0.2
3,170,841	+		LRK54_RS14225	0.40	+0.1
3,170,842	-		LRK54_RS14225	0.40	-0.4
3,170,842	-		LRK54_RS14225	0.40	-2.0
3,170,874	+		LRK54_RS14225	0.44	+0.1
3,170,874	+		LRK54_RS14225	0.44	+0.1
3,170,874	+		LRK54_RS14225	0.44	+0.4
3,170,874	+		LRK54_RS14225	0.44	-0.1
3,170,875	-		LRK54_RS14225	0.44	+0.2
3,170,875	-		LRK54_RS14225	0.44	+1.0
3,170,951	+		LRK54_RS14225	0.54	+0.4
3,170,951	+		LRK54_RS14225	0.54	+3.9
3,170,951	+		LRK54_RS14225	0.54	+0.0
3,170,952	-		LRK54_RS14225	0.54	-0.7
3,170,952	-		LRK54_RS14225	0.54	-0.5
3,171,098	+		LRK54_RS14225	0.74	-0.7
3,171,132	+		LRK54_RS14225	0.78	-1.0
3,171,133	-		LRK54_RS14225	0.78	+0.7
3,171,133	-		LRK54_RS14225	0.78	+0.8
3,171,444	+				-0.6
3,171,445	-				+0.4
3,171,537	+		LRK54_RS14230	0.23	+0.8
3,171,537	+		LRK54_RS14230	0.23	-0.3
3,171,537	+		LRK54_RS14230	0.23	-0.3
3,171,537	+		LRK54_RS14230	0.23	-1.5
3,171,537	+		LRK54_RS14230	0.23	+0.0
3,171,537	+		LRK54_RS14230	0.23	+1.4
3,171,537	+		LRK54_RS14230	0.23	-0.2
3,171,537	+		LRK54_RS14230	0.23	-0.8
3,171,538	-		LRK54_RS14230	0.23	+0.9
3,171,538	-		LRK54_RS14230	0.23	-0.6
3,171,538	-		LRK54_RS14230	0.23	-0.2
3,171,538	-		LRK54_RS14230	0.23	+1.6
3,171,538	-		LRK54_RS14230	0.23	-0.1
3,171,711	+		LRK54_RS14230	0.54	+0.6
3,171,712	-		LRK54_RS14230	0.54	-2.3
3,172,006	-				+0.9
3,172,006	-				+0.7
3,172,006	-				-1.3
3,172,006	-				-2.6
3,172,090	+				-0.2
3,172,090	+				+1.9
3,172,091	-				+1.2
3,172,091	-				+0.8
3,172,154	-				+0.4
3,172,154	-				-0.6
3,172,261	+				-0.3
3,172,261	+				-1.2
3,172,261	+				+0.0
3,172,261	+				-1.7
3,172,261	+				-0.5
3,172,261	+				+0.8
3,172,261	+				-0.5
3,172,261	+				-0.5
3,172,261	+				-0.9
3,172,261	+				+0.1
3,172,261	+				-3.0
3,172,261	+				-0.1
3,172,261	+				+0.8
3,172,261	+				-0.8
3,172,261	+				+1.4
3,172,261	+				+0.6
3,172,261	+				+0.5
3,172,262	-				-0.2
3,172,262	-				+1.2
3,172,262	-				-0.8
3,172,262	-				+0.1
3,172,262	-				-0.9
3,172,262	-				+0.8
3,172,262	-				-0.4
3,172,262	-				-0.6
3,172,262	-				+0.8
3,172,262	-				-1.4
3,172,262	-				-0.8
3,172,342	+		LRK54_RS14235	0.11	-0.1
3,172,343	-		LRK54_RS14235	0.11	+0.4
3,172,384	+		LRK54_RS14235	0.13	+0.6
3,172,384	+		LRK54_RS14235	0.13	+0.4
3,172,385	-		LRK54_RS14235	0.13	-0.5
3,172,385	-		LRK54_RS14235	0.13	+0.1
3,172,385	-		LRK54_RS14235	0.13	+1.4
3,172,396	+		LRK54_RS14235	0.13	+0.3
3,172,396	+		LRK54_RS14235	0.13	+0.5
3,172,396	+		LRK54_RS14235	0.13	-1.2
3,172,396	+		LRK54_RS14235	0.13	-0.6
3,172,396	+		LRK54_RS14235	0.13	-0.7
3,172,397	-		LRK54_RS14235	0.14	-0.6
3,172,397	-		LRK54_RS14235	0.14	-0.7
3,172,399	+		LRK54_RS14235	0.14	-0.8
3,172,400	-		LRK54_RS14235	0.14	-0.6
3,172,400	-		LRK54_RS14235	0.14	+0.8
3,172,400	-		LRK54_RS14235	0.14	-1.1
3,172,400	-		LRK54_RS14235	0.14	-0.4
3,172,400	-		LRK54_RS14235	0.14	-0.6
3,172,400	-		LRK54_RS14235	0.14	-1.8
3,172,400	-		LRK54_RS14235	0.14	+0.8
3,172,400	-		LRK54_RS14235	0.14	+0.0
3,172,405	+		LRK54_RS14235	0.14	+0.4
3,172,405	+		LRK54_RS14235	0.14	-0.8
3,172,405	+		LRK54_RS14235	0.14	-0.6
3,172,405	+		LRK54_RS14235	0.14	+0.2
3,172,405	+		LRK54_RS14235	0.14	+0.4
3,172,405	+		LRK54_RS14235	0.14	-0.2
3,172,405	+		LRK54_RS14235	0.14	-0.8
3,172,405	+		LRK54_RS14235	0.14	-0.5
3,172,406	-		LRK54_RS14235	0.14	-0.6
3,172,406	-		LRK54_RS14235	0.14	+2.4
3,172,406	-		LRK54_RS14235	0.14	+0.1
3,172,406	-		LRK54_RS14235	0.14	-0.6
3,172,406	-		LRK54_RS14235	0.14	-0.6
3,172,408	+		LRK54_RS14235	0.14	-0.5
3,172,408	+		LRK54_RS14235	0.14	-1.2
3,172,408	+		LRK54_RS14235	0.14	-0.1
3,172,409	-		LRK54_RS14235	0.14	+1.5
3,172,409	-		LRK54_RS14235	0.14	+0.7
3,172,409	-		LRK54_RS14235	0.14	-0.9
3,172,409	-		LRK54_RS14235	0.14	+0.5
3,172,409	-		LRK54_RS14235	0.14	-0.0
3,172,409	-		LRK54_RS14235	0.14	-0.8
3,172,423	+		LRK54_RS14235	0.15	-0.6
3,172,423	+		LRK54_RS14235	0.15	+1.1
3,172,423	+		LRK54_RS14235	0.15	+0.1
3,172,423	+		LRK54_RS14235	0.15	+0.7
3,172,423	+		LRK54_RS14235	0.15	+0.4
3,172,423	+		LRK54_RS14235	0.15	-0.2
3,172,423	+		LRK54_RS14235	0.15	-1.6
3,172,423	+		LRK54_RS14235	0.15	-0.9
3,172,424	-		LRK54_RS14235	0.15	+0.1
3,172,424	-		LRK54_RS14235	0.15	-0.8
3,172,424	-		LRK54_RS14235	0.15	+0.6
3,172,424	-		LRK54_RS14235	0.15	+0.9
3,172,424	-		LRK54_RS14235	0.15	-1.1
3,172,424	-		LRK54_RS14235	0.15	+0.3
3,172,424	-		LRK54_RS14235	0.15	-1.1
3,172,424	-		LRK54_RS14235	0.15	+1.8
3,172,424	-		LRK54_RS14235	0.15	-1.0
3,172,558	+		LRK54_RS14235	0.21	-1.7
3,172,558	+		LRK54_RS14235	0.21	+0.4
3,172,558	+		LRK54_RS14235	0.21	-1.1
3,172,558	+		LRK54_RS14235	0.21	+1.2
3,172,558	+		LRK54_RS14235	0.21	+0.0
3,172,558	+		LRK54_RS14235	0.21	-1.4
3,172,559	-		LRK54_RS14235	0.22	-0.5
3,172,559	-		LRK54_RS14235	0.22	-1.6
3,172,559	-		LRK54_RS14235	0.22	-0.6
3,172,582	+		LRK54_RS14235	0.23	+0.5
3,172,582	+		LRK54_RS14235	0.23	+0.1
3,172,582	+		LRK54_RS14235	0.23	-1.8
3,172,582	+		LRK54_RS14235	0.23	-0.2
3,172,582	+		LRK54_RS14235	0.23	-0.9
3,172,582	+		LRK54_RS14235	0.23	+0.0
3,172,582	+		LRK54_RS14235	0.23	-0.9
3,172,583	-		LRK54_RS14235	0.23	+0.8
3,172,583	-		LRK54_RS14235	0.23	-0.4
3,172,583	-		LRK54_RS14235	0.23	-0.5
3,172,663	+		LRK54_RS14235	0.27	-0.1
3,172,663	+		LRK54_RS14235	0.27	-0.6
3,172,663	+		LRK54_RS14235	0.27	+0.5
3,172,663	+		LRK54_RS14235	0.27	+0.3
3,172,663	+		LRK54_RS14235	0.27	-0.5
3,172,663	+		LRK54_RS14235	0.27	-2.2
3,172,663	+		LRK54_RS14235	0.27	-2.8
3,172,663	+		LRK54_RS14235	0.27	+0.0
3,172,663	+		LRK54_RS14235	0.27	-0.6
3,172,664	-		LRK54_RS14235	0.27	-1.7
3,172,664	-		LRK54_RS14235	0.27	-0.6
3,172,664	-		LRK54_RS14235	0.27	-0.6
3,172,664	-		LRK54_RS14235	0.27	+0.1
3,172,664	-		LRK54_RS14235	0.27	+0.8
3,172,664	-		LRK54_RS14235	0.27	-0.6
3,172,664	-		LRK54_RS14235	0.27	+0.4
3,172,664	-		LRK54_RS14235	0.27	+0.4
3,172,695	+		LRK54_RS14235	0.28	-2.9
3,172,695	+		LRK54_RS14235	0.28	-2.5
3,172,695	+		LRK54_RS14235	0.28	+0.2
3,172,695	+		LRK54_RS14235	0.28	+0.8
3,172,696	-		LRK54_RS14235	0.28	-1.1
3,172,696	-		LRK54_RS14235	0.28	-0.7
3,172,699	+		LRK54_RS14235	0.28	-0.1
3,172,699	+		LRK54_RS14235	0.28	-0.6
3,172,699	+		LRK54_RS14235	0.28	-1.1
3,172,700	-		LRK54_RS14235	0.28	+0.0
3,172,706	+		LRK54_RS14235	0.29	+0.0
3,172,707	-		LRK54_RS14235	0.29	-1.1
3,172,835	+		LRK54_RS14235	0.35	-0.6
3,172,835	+		LRK54_RS14235	0.35	-0.7
3,172,836	-		LRK54_RS14235	0.35	-0.3
3,172,836	-		LRK54_RS14235	0.35	-1.9
3,172,867	+		LRK54_RS14235	0.37	-0.6
3,172,867	+		LRK54_RS14235	0.37	-1.1
3,172,867	+		LRK54_RS14235	0.37	-0.3
3,172,867	+		LRK54_RS14235	0.37	+0.2
3,172,867	+		LRK54_RS14235	0.37	-0.4
3,172,867	+		LRK54_RS14235	0.37	-0.6
3,172,868	-		LRK54_RS14235	0.37	-1.6
3,172,939	+		LRK54_RS14235	0.40	+1.7
3,172,939	+		LRK54_RS14235	0.40	-1.6
3,172,939	+		LRK54_RS14235	0.40	-0.0
3,172,939	+		LRK54_RS14235	0.40	+0.7
3,172,939	+		LRK54_RS14235	0.40	+0.9
3,172,940	-		LRK54_RS14235	0.40	+0.9
3,172,940	-		LRK54_RS14235	0.40	-0.5
3,172,940	-		LRK54_RS14235	0.40	-0.5
3,172,940	-		LRK54_RS14235	0.40	-0.0
3,172,940	-		LRK54_RS14235	0.40	+0.0
3,172,940	-		LRK54_RS14235	0.40	-0.1
3,172,940	-		LRK54_RS14235	0.40	-1.2
3,172,945	+		LRK54_RS14235	0.41	-0.1
3,172,945	+		LRK54_RS14235	0.41	-0.0
3,172,946	-		LRK54_RS14235	0.41	+1.0