Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02025

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02020 and HSERO_RS02025 are separated by 12 nucleotidesHSERO_RS02025 and HSERO_RS02030 are separated by 86 nucleotidesHSERO_RS02030 and HSERO_RS02035 are separated by 9 nucleotides HSERO_RS02020: HSERO_RS02020 - tyrosyl-tRNA synthetase, at 442,540 to 443,790 _RS02020 HSERO_RS02025: HSERO_RS02025 - D-tyrosyl-tRNA(Tyr) deacylase, at 443,803 to 444,276 _RS02025 HSERO_RS02030: HSERO_RS02030 - phospholipid-binding protein, at 444,363 to 445,010 _RS02030 HSERO_RS02035: HSERO_RS02035 - phosphoglycerate mutase, at 445,020 to 445,664 _RS02035 Position (kb) 443 444 445Strain fitness (log2 ratio) -1 0 1at 443.878 kb on + strand, within HSERO_RS02025at 443.887 kb on - strand, within HSERO_RS02025at 443.892 kb on + strand, within HSERO_RS02025at 444.070 kb on + strand, within HSERO_RS02025at 444.207 kb on + strand, within HSERO_RS02025at 444.252 kb on + strandat 444.351 kb on - strandat 444.653 kb on + strand, within HSERO_RS02030at 444.661 kb on - strand, within HSERO_RS02030at 444.661 kb on - strand, within HSERO_RS02030at 444.676 kb on - strand, within HSERO_RS02030at 444.940 kb on + strand, within HSERO_RS02030at 445.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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443,878 + HSERO_RS02025 0.16 +0.9
443,887 - HSERO_RS02025 0.18 +0.5
443,892 + HSERO_RS02025 0.19 +0.1
444,070 + HSERO_RS02025 0.56 +0.8
444,207 + HSERO_RS02025 0.85 -0.1
444,252 + +0.1
444,351 - -0.3
444,653 + HSERO_RS02030 0.45 -0.6
444,661 - HSERO_RS02030 0.46 -0.5
444,661 - HSERO_RS02030 0.46 +0.4
444,676 - HSERO_RS02030 0.48 -0.5
444,940 + HSERO_RS02030 0.89 -0.4
445,036 - +0.1

Or see this region's nucleotide sequence