Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30130

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30115 and BPHYT_RS30120 are separated by 169 nucleotidesBPHYT_RS30120 and BPHYT_RS30125 are separated by 29 nucleotidesBPHYT_RS30125 and BPHYT_RS30130 are separated by 94 nucleotidesBPHYT_RS30130 and BPHYT_RS30135 are separated by 230 nucleotides BPHYT_RS30115: BPHYT_RS30115 - hypothetical protein, at 2,310,137 to 2,310,559 _RS30115 BPHYT_RS30120: BPHYT_RS30120 - heavy metal transporter, at 2,310,729 to 2,310,926 _RS30120 BPHYT_RS30125: BPHYT_RS30125 - hypothetical protein, at 2,310,956 to 2,311,369 _RS30125 BPHYT_RS30130: BPHYT_RS30130 - AraC family transcriptional regulator, at 2,311,464 to 2,312,450 _RS30130 BPHYT_RS30135: BPHYT_RS30135 - SAM-dependent methyltransferase, at 2,312,681 to 2,313,514 _RS30135 Position (kb) 2311 2312 2313Strain fitness (log2 ratio) -2 -1 0 1at 2310.563 kb on + strandat 2310.572 kb on + strandat 2310.573 kb on - strandat 2310.749 kb on + strand, within BPHYT_RS30120at 2310.852 kb on - strand, within BPHYT_RS30120at 2311.656 kb on - strand, within BPHYT_RS30130at 2311.845 kb on - strand, within BPHYT_RS30130at 2312.093 kb on - strand, within BPHYT_RS30130at 2312.765 kb on + strand, within BPHYT_RS30135at 2313.109 kb on - strand, within BPHYT_RS30135at 2313.356 kb on + strand, within BPHYT_RS30135

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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2,310,563 + -1.2
2,310,572 + -0.1
2,310,573 - +0.2
2,310,749 + BPHYT_RS30120 0.10 -0.0
2,310,852 - BPHYT_RS30120 0.62 +0.3
2,311,656 - BPHYT_RS30130 0.19 -0.9
2,311,845 - BPHYT_RS30130 0.39 -2.5
2,312,093 - BPHYT_RS30130 0.64 -0.1
2,312,765 + BPHYT_RS30135 0.10 +0.2
2,313,109 - BPHYT_RS30135 0.51 +0.5
2,313,356 + BPHYT_RS30135 0.81 -0.5

Or see this region's nucleotide sequence