Experiment: LB, pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23200 and BPHYT_RS23205 are separated by 183 nucleotides BPHYT_RS23205 and BPHYT_RS23210 are separated by 78 nucleotides BPHYT_RS23210 and BPHYT_RS23215 are separated by 107 nucleotides
BPHYT_RS23200: BPHYT_RS23200 - cupin, at 770,833 to 771,249
_RS23200
BPHYT_RS23205: BPHYT_RS23205 - alkylhydroperoxidase, at 771,433 to 772,038
_RS23205
BPHYT_RS23210: BPHYT_RS23210 - MFS transporter, at 772,117 to 773,367
_RS23210
BPHYT_RS23215: BPHYT_RS23215 - transcriptional regulator, at 773,475 to 774,413
_RS23215
Position (kb) 772
773
774 Strain fitness (log2 ratio) -1
0
1 at 771.322 kb on + strand at 771.391 kb on - strand at 771.404 kb on + strand at 771.405 kb on - strand at 771.691 kb on + strand, within BPHYT_RS23205 at 771.988 kb on + strand at 772.503 kb on - strand, within BPHYT_RS23210 at 772.876 kb on + strand, within BPHYT_RS23210 at 774.199 kb on + strand, within BPHYT_RS23215 at 774.199 kb on + strand, within BPHYT_RS23215 at 774.199 kb on + strand, within BPHYT_RS23215 at 774.209 kb on - strand, within BPHYT_RS23215
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH7 remove 771,322 + -0.4 771,391 - -0.6 771,404 + +0.1 771,405 - +0.4 771,691 + BPHYT_RS23205 0.43 -0.3 771,988 + -0.2 772,503 - BPHYT_RS23210 0.31 +0.7 772,876 + BPHYT_RS23210 0.61 -0.8 774,199 + BPHYT_RS23215 0.77 -1.7 774,199 + BPHYT_RS23215 0.77 -0.1 774,199 + BPHYT_RS23215 0.77 +0.3 774,209 - BPHYT_RS23215 0.78 -0.3
Or see this region's nucleotide sequence