Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20695

Experiment: CDM1 without Valine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12440 and BBR_RS20695 are separated by 42 nucleotidesBBR_RS20695 and BBR_RS12445 are separated by 433 nucleotidesBBR_RS12445 and BBR_RS12450 are separated by 168 nucleotides BBR_RS12440: BBR_RS12440 - Permease of ABC transporter system, at 539,673 to 541,463 _RS12440 BBR_RS20695: BBR_RS20695 - hypothetical protein, at 541,506 to 541,820 _RS20695 BBR_RS12445: BBR_RS12445 - 50S ribosomal protein L19, at 542,254 to 542,619 _RS12445 BBR_RS12450: BBR_RS12450 - signal peptidase I, at 542,788 to 543,711 _RS12450 Position (kb) 541 542Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 540.510 kb on - strand, within BBR_RS12440at 540.532 kb on + strand, within BBR_RS12440at 540.536 kb on - strand, within BBR_RS12440at 540.547 kb on + strand, within BBR_RS12440at 540.562 kb on + strand, within BBR_RS12440at 540.565 kb on - strand, within BBR_RS12440at 540.565 kb on - strand, within BBR_RS12440at 540.570 kb on + strand, within BBR_RS12440at 540.575 kb on - strand, within BBR_RS12440at 540.575 kb on - strand, within BBR_RS12440at 540.596 kb on - strand, within BBR_RS12440at 540.631 kb on + strand, within BBR_RS12440at 540.654 kb on - strand, within BBR_RS12440at 540.654 kb on - strand, within BBR_RS12440at 540.654 kb on - strand, within BBR_RS12440at 540.677 kb on + strand, within BBR_RS12440at 540.725 kb on + strand, within BBR_RS12440at 540.747 kb on - strand, within BBR_RS12440at 540.749 kb on + strand, within BBR_RS12440at 540.749 kb on + strand, within BBR_RS12440at 540.749 kb on + strand, within BBR_RS12440at 540.752 kb on - strand, within BBR_RS12440at 540.757 kb on - strand, within BBR_RS12440at 540.794 kb on + strand, within BBR_RS12440at 540.804 kb on + strand, within BBR_RS12440at 540.804 kb on + strand, within BBR_RS12440at 540.804 kb on + strand, within BBR_RS12440at 540.836 kb on - strand, within BBR_RS12440at 540.846 kb on - strand, within BBR_RS12440at 540.876 kb on - strand, within BBR_RS12440at 540.887 kb on + strand, within BBR_RS12440at 540.887 kb on + strand, within BBR_RS12440at 540.887 kb on + strand, within BBR_RS12440at 540.893 kb on + strand, within BBR_RS12440at 540.893 kb on + strand, within BBR_RS12440at 540.893 kb on + strand, within BBR_RS12440at 540.895 kb on - strand, within BBR_RS12440at 540.901 kb on - strand, within BBR_RS12440at 540.901 kb on - strand, within BBR_RS12440at 540.901 kb on - strand, within BBR_RS12440at 540.910 kb on + strand, within BBR_RS12440at 540.929 kb on + strand, within BBR_RS12440at 540.937 kb on - strand, within BBR_RS12440at 540.945 kb on - strand, within BBR_RS12440at 540.949 kb on - strand, within BBR_RS12440at 540.960 kb on + strand, within BBR_RS12440at 541.019 kb on + strand, within BBR_RS12440at 541.025 kb on - strand, within BBR_RS12440at 541.027 kb on - strand, within BBR_RS12440at 541.097 kb on - strand, within BBR_RS12440at 541.137 kb on - strand, within BBR_RS12440at 541.152 kb on + strand, within BBR_RS12440at 541.162 kb on + strand, within BBR_RS12440at 541.172 kb on - strand, within BBR_RS12440at 541.200 kb on + strand, within BBR_RS12440at 541.219 kb on + strand, within BBR_RS12440at 541.241 kb on + strand, within BBR_RS12440at 541.249 kb on - strand, within BBR_RS12440at 541.260 kb on + strand, within BBR_RS12440at 541.268 kb on - strand, within BBR_RS12440at 541.268 kb on - strand, within BBR_RS12440at 541.283 kb on + strand, within BBR_RS12440at 541.347 kb on - strandat 541.364 kb on + strandat 541.371 kb on + strandat 541.379 kb on + strandat 541.383 kb on + strandat 541.396 kb on - strandat 541.430 kb on - strandat 541.430 kb on - strandat 541.470 kb on + strandat 541.570 kb on - strand, within BBR_RS20695at 541.661 kb on + strand, within BBR_RS20695at 541.689 kb on + strand, within BBR_RS20695at 541.710 kb on + strand, within BBR_RS20695at 541.711 kb on - strand, within BBR_RS20695at 541.783 kb on + strand, within BBR_RS20695at 541.847 kb on - strandat 541.864 kb on + strandat 541.888 kb on + strandat 541.889 kb on + strandat 541.930 kb on + strandat 541.932 kb on - strandat 541.941 kb on + strandat 541.941 kb on + strandat 541.948 kb on + strandat 541.968 kb on + strandat 542.011 kb on - strandat 542.717 kb on - strandat 542.753 kb on + strandat 542.760 kb on - strandat 542.760 kb on - strandat 542.771 kb on - strandat 542.779 kb on + strandat 542.789 kb on + strandat 542.796 kb on - strandat 542.796 kb on - strandat 542.798 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Valine
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540,510 - BBR_RS12440 0.47 -0.6
540,532 + BBR_RS12440 0.48 +0.3
540,536 - BBR_RS12440 0.48 -0.2
540,547 + BBR_RS12440 0.49 -0.4
540,562 + BBR_RS12440 0.50 -1.4
540,565 - BBR_RS12440 0.50 -1.2
540,565 - BBR_RS12440 0.50 -0.5
540,570 + BBR_RS12440 0.50 +0.2
540,575 - BBR_RS12440 0.50 +0.4
540,575 - BBR_RS12440 0.50 -0.2
540,596 - BBR_RS12440 0.52 -1.1
540,631 + BBR_RS12440 0.53 -2.0
540,654 - BBR_RS12440 0.55 -0.4
540,654 - BBR_RS12440 0.55 +0.2
540,654 - BBR_RS12440 0.55 -0.7
540,677 + BBR_RS12440 0.56 -0.8
540,725 + BBR_RS12440 0.59 -1.1
540,747 - BBR_RS12440 0.60 -0.3
540,749 + BBR_RS12440 0.60 -0.4
540,749 + BBR_RS12440 0.60 -0.0
540,749 + BBR_RS12440 0.60 -0.8
540,752 - BBR_RS12440 0.60 -0.0
540,757 - BBR_RS12440 0.61 +0.1
540,794 + BBR_RS12440 0.63 -1.0
540,804 + BBR_RS12440 0.63 -0.3
540,804 + BBR_RS12440 0.63 +0.2
540,804 + BBR_RS12440 0.63 +0.0
540,836 - BBR_RS12440 0.65 -0.5
540,846 - BBR_RS12440 0.65 -0.4
540,876 - BBR_RS12440 0.67 -0.4
540,887 + BBR_RS12440 0.68 -1.6
540,887 + BBR_RS12440 0.68 -1.8
540,887 + BBR_RS12440 0.68 +0.3
540,893 + BBR_RS12440 0.68 -1.1
540,893 + BBR_RS12440 0.68 -1.0
540,893 + BBR_RS12440 0.68 -2.0
540,895 - BBR_RS12440 0.68 +0.8
540,901 - BBR_RS12440 0.69 -1.1
540,901 - BBR_RS12440 0.69 -0.9
540,901 - BBR_RS12440 0.69 -1.6
540,910 + BBR_RS12440 0.69 -1.8
540,929 + BBR_RS12440 0.70 -2.4
540,937 - BBR_RS12440 0.71 -1.2
540,945 - BBR_RS12440 0.71 +0.6
540,949 - BBR_RS12440 0.71 -0.9
540,960 + BBR_RS12440 0.72 -2.1
541,019 + BBR_RS12440 0.75 -2.1
541,025 - BBR_RS12440 0.75 +0.1
541,027 - BBR_RS12440 0.76 +0.2
541,097 - BBR_RS12440 0.80 -0.4
541,137 - BBR_RS12440 0.82 -0.8
541,152 + BBR_RS12440 0.83 -0.9
541,162 + BBR_RS12440 0.83 -1.1
541,172 - BBR_RS12440 0.84 -0.6
541,200 + BBR_RS12440 0.85 -2.6
541,219 + BBR_RS12440 0.86 -1.7
541,241 + BBR_RS12440 0.88 -0.6
541,249 - BBR_RS12440 0.88 +1.1
541,260 + BBR_RS12440 0.89 -1.9
541,268 - BBR_RS12440 0.89 -0.4
541,268 - BBR_RS12440 0.89 -1.2
541,283 + BBR_RS12440 0.90 -1.8
541,347 - -3.8
541,364 + -2.1
541,371 + -2.5
541,379 + +0.1
541,383 + -1.2
541,396 - -1.9
541,430 - -1.1
541,430 - -0.5
541,470 + +0.5
541,570 - BBR_RS20695 0.20 -1.6
541,661 + BBR_RS20695 0.49 -0.8
541,689 + BBR_RS20695 0.58 -3.0
541,710 + BBR_RS20695 0.65 -1.4
541,711 - BBR_RS20695 0.65 -0.8
541,783 + BBR_RS20695 0.88 -0.7
541,847 - -1.7
541,864 + +0.2
541,888 + -0.3
541,889 + -0.5
541,930 + +0.4
541,932 - -1.4
541,941 + -0.0
541,941 + +0.1
541,948 + -0.4
541,968 + -0.2
542,011 - -2.6
542,717 - -0.2
542,753 + +0.7
542,760 - -1.0
542,760 - -2.4
542,771 - -1.7
542,779 + -0.9
542,789 + -1.2
542,796 - +0.0
542,796 - -0.7
542,798 + -2.4

Or see this region's nucleotide sequence