Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22885

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22880 and AO356_22885 are separated by 371 nucleotidesAO356_22885 and AO356_22890 are separated by 95 nucleotides AO356_22880: AO356_22880 - aspartate aminotransferase, at 5,107,242 to 5,108,429 _22880 AO356_22885: AO356_22885 - hypothetical protein, at 5,108,801 to 5,109,604 _22885 AO356_22890: AO356_22890 - hypothetical protein, at 5,109,700 to 5,111,709 _22890 Position (kb) 5108 5109 5110Strain fitness (log2 ratio) -2 -1 0 1at 5107.860 kb on + strand, within AO356_22880at 5107.860 kb on + strand, within AO356_22880at 5107.861 kb on - strand, within AO356_22880at 5107.861 kb on - strand, within AO356_22880at 5107.861 kb on - strand, within AO356_22880at 5107.861 kb on - strand, within AO356_22880at 5107.875 kb on + strand, within AO356_22880at 5107.875 kb on + strand, within AO356_22880at 5107.875 kb on + strand, within AO356_22880at 5107.875 kb on + strand, within AO356_22880at 5107.876 kb on - strand, within AO356_22880at 5107.876 kb on - strand, within AO356_22880at 5108.277 kb on + strand, within AO356_22880at 5108.331 kb on - strandat 5108.472 kb on + strandat 5108.473 kb on - strandat 5108.476 kb on + strandat 5108.476 kb on + strandat 5108.477 kb on - strandat 5108.477 kb on - strandat 5108.477 kb on - strandat 5108.513 kb on + strandat 5108.524 kb on - strandat 5108.547 kb on + strandat 5108.569 kb on - strandat 5108.624 kb on + strandat 5108.625 kb on - strandat 5108.796 kb on + strandat 5108.796 kb on + strandat 5108.796 kb on + strandat 5108.797 kb on - strandat 5108.800 kb on + strandat 5108.800 kb on + strandat 5108.801 kb on - strandat 5108.801 kb on - strandat 5108.881 kb on + strandat 5108.881 kb on + strandat 5108.882 kb on - strand, within AO356_22885at 5109.013 kb on - strand, within AO356_22885at 5109.015 kb on + strand, within AO356_22885at 5109.016 kb on - strand, within AO356_22885at 5109.016 kb on - strand, within AO356_22885at 5109.057 kb on + strand, within AO356_22885at 5109.057 kb on + strand, within AO356_22885at 5109.061 kb on + strand, within AO356_22885at 5109.062 kb on - strand, within AO356_22885at 5109.146 kb on + strand, within AO356_22885at 5109.175 kb on - strand, within AO356_22885at 5109.231 kb on - strand, within AO356_22885at 5109.324 kb on + strand, within AO356_22885at 5109.565 kb on + strandat 5109.743 kb on + strandat 5109.863 kb on + strandat 5109.863 kb on + strandat 5109.868 kb on + strandat 5109.869 kb on - strandat 5109.869 kb on - strandat 5109.869 kb on - strandat 5109.977 kb on + strand, within AO356_22890at 5109.985 kb on - strand, within AO356_22890at 5110.030 kb on + strand, within AO356_22890at 5110.031 kb on - strand, within AO356_22890at 5110.084 kb on - strand, within AO356_22890at 5110.087 kb on + strand, within AO356_22890at 5110.104 kb on + strand, within AO356_22890at 5110.132 kb on + strand, within AO356_22890at 5110.133 kb on - strand, within AO356_22890at 5110.158 kb on + strand, within AO356_22890at 5110.246 kb on + strand, within AO356_22890at 5110.247 kb on - strand, within AO356_22890at 5110.390 kb on + strand, within AO356_22890at 5110.391 kb on - strand, within AO356_22890at 5110.454 kb on - strand, within AO356_22890at 5110.454 kb on - strand, within AO356_22890at 5110.457 kb on + strand, within AO356_22890at 5110.458 kb on - strand, within AO356_22890at 5110.477 kb on - strand, within AO356_22890at 5110.477 kb on - strand, within AO356_22890at 5110.505 kb on - strand, within AO356_22890at 5110.522 kb on - strand, within AO356_22890at 5110.522 kb on - strand, within AO356_22890

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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5,107,860 + AO356_22880 0.52 -0.9
5,107,860 + AO356_22880 0.52 -0.6
5,107,861 - AO356_22880 0.52 -1.0
5,107,861 - AO356_22880 0.52 -0.0
5,107,861 - AO356_22880 0.52 +0.1
5,107,861 - AO356_22880 0.52 -0.4
5,107,875 + AO356_22880 0.53 +0.2
5,107,875 + AO356_22880 0.53 -0.7
5,107,875 + AO356_22880 0.53 +0.3
5,107,875 + AO356_22880 0.53 -0.1
5,107,876 - AO356_22880 0.53 +0.2
5,107,876 - AO356_22880 0.53 -0.6
5,108,277 + AO356_22880 0.87 -0.0
5,108,331 - -0.1
5,108,472 + +0.4
5,108,473 - +0.6
5,108,476 + -0.0
5,108,476 + +0.6
5,108,477 - -0.2
5,108,477 - +0.5
5,108,477 - -0.5
5,108,513 + +0.1
5,108,524 - -0.1
5,108,547 + +0.0
5,108,569 - -0.5
5,108,624 + +0.3
5,108,625 - +0.5
5,108,796 + -0.0
5,108,796 + +0.4
5,108,796 + +0.9
5,108,797 - +0.3
5,108,800 + +0.4
5,108,800 + +0.4
5,108,801 - +0.8
5,108,801 - +1.0
5,108,881 + +1.2
5,108,881 + -0.0
5,108,882 - AO356_22885 0.10 -0.0
5,109,013 - AO356_22885 0.26 -0.7
5,109,015 + AO356_22885 0.27 +0.4
5,109,016 - AO356_22885 0.27 +1.1
5,109,016 - AO356_22885 0.27 +0.6
5,109,057 + AO356_22885 0.32 +0.9
5,109,057 + AO356_22885 0.32 +0.2
5,109,061 + AO356_22885 0.32 +0.2
5,109,062 - AO356_22885 0.32 +1.2
5,109,146 + AO356_22885 0.43 +0.1
5,109,175 - AO356_22885 0.47 +1.1
5,109,231 - AO356_22885 0.53 -0.1
5,109,324 + AO356_22885 0.65 +0.2
5,109,565 + -0.6
5,109,743 + -0.7
5,109,863 + +0.1
5,109,863 + -1.4
5,109,868 + -0.6
5,109,869 - -1.3
5,109,869 - +0.7
5,109,869 - +0.3
5,109,977 + AO356_22890 0.14 +0.4
5,109,985 - AO356_22890 0.14 -0.7
5,110,030 + AO356_22890 0.16 +0.5
5,110,031 - AO356_22890 0.16 +1.1
5,110,084 - AO356_22890 0.19 +1.3
5,110,087 + AO356_22890 0.19 -0.3
5,110,104 + AO356_22890 0.20 -1.0
5,110,132 + AO356_22890 0.21 -0.9
5,110,133 - AO356_22890 0.22 +1.0
5,110,158 + AO356_22890 0.23 -0.5
5,110,246 + AO356_22890 0.27 -1.1
5,110,247 - AO356_22890 0.27 -0.3
5,110,390 + AO356_22890 0.34 -0.7
5,110,391 - AO356_22890 0.34 -0.5
5,110,454 - AO356_22890 0.38 +0.6
5,110,454 - AO356_22890 0.38 -0.9
5,110,457 + AO356_22890 0.38 +0.7
5,110,458 - AO356_22890 0.38 +1.3
5,110,477 - AO356_22890 0.39 +0.2
5,110,477 - AO356_22890 0.39 -2.1
5,110,505 - AO356_22890 0.40 +0.9
5,110,522 - AO356_22890 0.41 -0.1
5,110,522 - AO356_22890 0.41 +0.1

Or see this region's nucleotide sequence