Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20730

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20725 and AO356_20730 are separated by 250 nucleotidesAO356_20730 and AO356_20735 are separated by 74 nucleotidesAO356_20735 and AO356_20740 are separated by 99 nucleotides AO356_20725: AO356_20725 - diaminopimelate epimerase, at 4,620,780 to 4,621,583 _20725 AO356_20730: AO356_20730 - hypothetical protein, at 4,621,834 to 4,622,394 _20730 AO356_20735: AO356_20735 - Suppressor of fused protein (SUFU), at 4,622,469 to 4,623,284 _20735 AO356_20740: AO356_20740 - cell wall assembly protein, at 4,623,384 to 4,624,007 _20740 Position (kb) 4621 4622 4623Strain fitness (log2 ratio) -2 -1 0 1at 4620.905 kb on - strand, within AO356_20725at 4620.905 kb on - strand, within AO356_20725at 4621.085 kb on + strand, within AO356_20725at 4621.085 kb on + strand, within AO356_20725at 4621.085 kb on + strand, within AO356_20725at 4621.086 kb on - strand, within AO356_20725at 4621.086 kb on - strand, within AO356_20725at 4621.097 kb on + strand, within AO356_20725at 4621.098 kb on - strand, within AO356_20725at 4621.242 kb on + strand, within AO356_20725at 4621.242 kb on + strand, within AO356_20725at 4621.243 kb on - strand, within AO356_20725at 4621.243 kb on - strand, within AO356_20725at 4621.361 kb on + strand, within AO356_20725at 4621.362 kb on - strand, within AO356_20725at 4621.466 kb on + strand, within AO356_20725at 4621.467 kb on - strand, within AO356_20725at 4621.589 kb on + strandat 4621.590 kb on - strandat 4621.667 kb on + strandat 4621.667 kb on + strandat 4621.668 kb on - strandat 4621.668 kb on - strandat 4621.671 kb on + strandat 4621.671 kb on + strandat 4621.671 kb on + strandat 4621.671 kb on + strandat 4621.671 kb on + strandat 4621.671 kb on + strandat 4621.671 kb on + strandat 4621.671 kb on + strandat 4621.671 kb on + strandat 4621.671 kb on + strandat 4621.671 kb on + strandat 4621.671 kb on + strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.672 kb on - strandat 4621.946 kb on - strand, within AO356_20730at 4621.946 kb on - strand, within AO356_20730at 4621.946 kb on - strand, within AO356_20730at 4621.946 kb on - strand, within AO356_20730at 4621.970 kb on + strand, within AO356_20730at 4621.971 kb on - strand, within AO356_20730at 4622.001 kb on + strand, within AO356_20730at 4622.002 kb on - strand, within AO356_20730at 4622.002 kb on - strand, within AO356_20730at 4622.002 kb on - strand, within AO356_20730at 4622.008 kb on - strand, within AO356_20730at 4622.085 kb on - strand, within AO356_20730at 4622.204 kb on + strand, within AO356_20730at 4622.205 kb on - strand, within AO356_20730at 4622.362 kb on + strandat 4622.362 kb on + strandat 4622.362 kb on + strandat 4622.363 kb on - strandat 4622.363 kb on - strandat 4622.363 kb on - strandat 4622.363 kb on - strandat 4622.363 kb on - strandat 4622.394 kb on + strandat 4622.394 kb on + strandat 4622.394 kb on + strandat 4622.394 kb on + strandat 4622.394 kb on + strandat 4622.395 kb on - strandat 4622.395 kb on - strandat 4622.395 kb on - strandat 4622.395 kb on - strandat 4622.436 kb on + strandat 4622.436 kb on + strandat 4622.436 kb on + strandat 4622.448 kb on - strandat 4622.665 kb on - strand, within AO356_20735at 4622.860 kb on - strand, within AO356_20735at 4623.154 kb on + strand, within AO356_20735at 4623.180 kb on + strand, within AO356_20735at 4623.180 kb on + strand, within AO356_20735at 4623.180 kb on + strand, within AO356_20735at 4623.180 kb on + strand, within AO356_20735at 4623.251 kb on + strandat 4623.251 kb on + strandat 4623.251 kb on + strandat 4623.252 kb on - strandat 4623.252 kb on - strandat 4623.382 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,620,905 - AO356_20725 0.16 -1.1
4,620,905 - AO356_20725 0.16 +0.2
4,621,085 + AO356_20725 0.38 -0.9
4,621,085 + AO356_20725 0.38 +1.0
4,621,085 + AO356_20725 0.38 +1.2
4,621,086 - AO356_20725 0.38 +0.3
4,621,086 - AO356_20725 0.38 -0.6
4,621,097 + AO356_20725 0.39 +0.1
4,621,098 - AO356_20725 0.40 -0.8
4,621,242 + AO356_20725 0.57 -0.2
4,621,242 + AO356_20725 0.57 +0.1
4,621,243 - AO356_20725 0.58 -1.2
4,621,243 - AO356_20725 0.58 -1.0
4,621,361 + AO356_20725 0.72 -0.6
4,621,362 - AO356_20725 0.72 -0.6
4,621,466 + AO356_20725 0.85 +0.0
4,621,467 - AO356_20725 0.85 +0.2
4,621,589 + +0.2
4,621,590 - +0.9
4,621,667 + +0.1
4,621,667 + +0.7
4,621,668 - -0.3
4,621,668 - +0.7
4,621,671 + -0.9
4,621,671 + +0.2
4,621,671 + +0.8
4,621,671 + -0.1
4,621,671 + +0.6
4,621,671 + -0.2
4,621,671 + +0.3
4,621,671 + +0.7
4,621,671 + +0.3
4,621,671 + +0.3
4,621,671 + +1.7
4,621,671 + +0.2
4,621,672 - -0.1
4,621,672 - -0.0
4,621,672 - -0.1
4,621,672 - +0.4
4,621,672 - +0.7
4,621,672 - +0.5
4,621,672 - +0.6
4,621,672 - -0.0
4,621,672 - -0.1
4,621,672 - +0.2
4,621,672 - -0.6
4,621,672 - -0.6
4,621,672 - -0.4
4,621,672 - -0.2
4,621,946 - AO356_20730 0.20 -0.2
4,621,946 - AO356_20730 0.20 -0.2
4,621,946 - AO356_20730 0.20 -0.1
4,621,946 - AO356_20730 0.20 +0.2
4,621,970 + AO356_20730 0.24 -1.0
4,621,971 - AO356_20730 0.24 +0.9
4,622,001 + AO356_20730 0.30 +0.7
4,622,002 - AO356_20730 0.30 +0.1
4,622,002 - AO356_20730 0.30 -0.3
4,622,002 - AO356_20730 0.30 -0.1
4,622,008 - AO356_20730 0.31 +0.9
4,622,085 - AO356_20730 0.45 +0.1
4,622,204 + AO356_20730 0.66 -0.8
4,622,205 - AO356_20730 0.66 +0.7
4,622,362 + -0.2
4,622,362 + +0.1
4,622,362 + -0.2
4,622,363 - -0.6
4,622,363 - +0.2
4,622,363 - -0.5
4,622,363 - -0.7
4,622,363 - +0.9
4,622,394 + -0.4
4,622,394 + -1.6
4,622,394 + +0.0
4,622,394 + -0.5
4,622,394 + -0.1
4,622,395 - +0.0
4,622,395 - -0.4
4,622,395 - -0.1
4,622,395 - +0.4
4,622,436 + -0.0
4,622,436 + -0.1
4,622,436 + -0.1
4,622,448 - +0.8
4,622,665 - AO356_20735 0.24 -0.6
4,622,860 - AO356_20735 0.48 +0.5
4,623,154 + AO356_20735 0.84 +0.7
4,623,180 + AO356_20735 0.87 -0.9
4,623,180 + AO356_20735 0.87 -0.3
4,623,180 + AO356_20735 0.87 +0.4
4,623,180 + AO356_20735 0.87 +0.2
4,623,251 + +0.2
4,623,251 + -0.5
4,623,251 + +0.6
4,623,252 - -2.0
4,623,252 - -0.4
4,623,382 - -1.6

Or see this region's nucleotide sequence