Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17000

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16995 and AO356_17000 are separated by 231 nucleotidesAO356_17000 and AO356_17005 are separated by 242 nucleotides AO356_16995: AO356_16995 - hypothetical protein, at 3,828,350 to 3,829,051 _16995 AO356_17000: AO356_17000 - diguanylate cyclase, at 3,829,283 to 3,830,296 _17000 AO356_17005: AO356_17005 - LysR family transcriptional regulator, at 3,830,539 to 3,831,456 _17005 Position (kb) 3829 3830 3831Strain fitness (log2 ratio) -2 -1 0 1at 3828.351 kb on + strandat 3828.351 kb on + strandat 3828.351 kb on + strandat 3828.351 kb on + strandat 3828.351 kb on + strandat 3828.351 kb on + strandat 3828.351 kb on + strandat 3828.352 kb on - strandat 3828.352 kb on - strandat 3828.491 kb on + strand, within AO356_16995at 3828.678 kb on - strand, within AO356_16995at 3828.678 kb on - strand, within AO356_16995at 3828.678 kb on - strand, within AO356_16995at 3828.696 kb on + strand, within AO356_16995at 3828.729 kb on + strand, within AO356_16995at 3828.729 kb on + strand, within AO356_16995at 3828.729 kb on + strand, within AO356_16995at 3828.729 kb on + strand, within AO356_16995at 3828.730 kb on - strand, within AO356_16995at 3828.730 kb on - strand, within AO356_16995at 3828.730 kb on - strand, within AO356_16995at 3828.838 kb on - strand, within AO356_16995at 3828.979 kb on + strand, within AO356_16995at 3828.996 kb on + strandat 3829.022 kb on + strandat 3829.023 kb on - strandat 3829.063 kb on + strandat 3829.064 kb on - strandat 3829.064 kb on - strandat 3829.064 kb on - strandat 3829.118 kb on - strandat 3829.122 kb on + strandat 3829.122 kb on + strandat 3829.123 kb on - strandat 3829.123 kb on - strandat 3829.123 kb on - strandat 3829.323 kb on + strandat 3829.323 kb on + strandat 3829.324 kb on - strandat 3829.324 kb on - strandat 3829.385 kb on + strand, within AO356_17000at 3829.386 kb on - strand, within AO356_17000at 3829.569 kb on - strand, within AO356_17000at 3829.569 kb on - strand, within AO356_17000at 3829.569 kb on - strand, within AO356_17000at 3829.953 kb on + strand, within AO356_17000at 3829.977 kb on + strand, within AO356_17000at 3829.977 kb on + strand, within AO356_17000at 3829.977 kb on + strand, within AO356_17000at 3829.977 kb on + strand, within AO356_17000at 3829.978 kb on - strand, within AO356_17000at 3829.978 kb on - strand, within AO356_17000at 3829.978 kb on - strand, within AO356_17000at 3829.978 kb on - strand, within AO356_17000at 3829.978 kb on - strand, within AO356_17000at 3830.040 kb on + strand, within AO356_17000at 3830.071 kb on - strand, within AO356_17000at 3830.148 kb on + strand, within AO356_17000at 3830.167 kb on - strand, within AO356_17000at 3830.234 kb on + strandat 3830.321 kb on - strandat 3830.349 kb on + strandat 3830.349 kb on + strandat 3830.349 kb on + strandat 3830.350 kb on - strandat 3830.350 kb on - strandat 3830.350 kb on - strandat 3830.350 kb on - strandat 3830.350 kb on - strandat 3830.350 kb on - strandat 3830.350 kb on - strandat 3830.373 kb on - strandat 3830.373 kb on - strandat 3830.417 kb on + strandat 3830.417 kb on + strandat 3830.418 kb on - strandat 3830.520 kb on - strandat 3830.520 kb on - strandat 3830.563 kb on - strandat 3830.631 kb on - strand, within AO356_17005at 3830.631 kb on - strand, within AO356_17005at 3830.631 kb on - strand, within AO356_17005at 3830.631 kb on - strand, within AO356_17005at 3830.631 kb on - strand, within AO356_17005at 3830.663 kb on + strand, within AO356_17005at 3830.664 kb on - strand, within AO356_17005at 3830.664 kb on - strand, within AO356_17005at 3830.664 kb on - strand, within AO356_17005at 3830.879 kb on + strand, within AO356_17005at 3830.880 kb on - strand, within AO356_17005at 3830.948 kb on + strand, within AO356_17005at 3830.949 kb on - strand, within AO356_17005at 3830.949 kb on - strand, within AO356_17005at 3830.949 kb on - strand, within AO356_17005at 3830.978 kb on + strand, within AO356_17005at 3830.978 kb on + strand, within AO356_17005at 3830.978 kb on + strand, within AO356_17005at 3830.979 kb on - strand, within AO356_17005at 3830.979 kb on - strand, within AO356_17005at 3830.979 kb on - strand, within AO356_17005at 3830.979 kb on - strand, within AO356_17005at 3831.242 kb on - strand, within AO356_17005at 3831.242 kb on - strand, within AO356_17005at 3831.242 kb on - strand, within AO356_17005at 3831.242 kb on - strand, within AO356_17005at 3831.242 kb on - strand, within AO356_17005at 3831.260 kb on + strand, within AO356_17005at 3831.260 kb on + strand, within AO356_17005at 3831.261 kb on - strand, within AO356_17005at 3831.263 kb on + strand, within AO356_17005at 3831.264 kb on - strand, within AO356_17005at 3831.264 kb on - strand, within AO356_17005at 3831.264 kb on - strand, within AO356_17005at 3831.264 kb on - strand, within AO356_17005at 3831.264 kb on - strand, within AO356_17005

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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3,828,351 + -0.2
3,828,351 + -2.1
3,828,351 + +0.7
3,828,351 + -0.2
3,828,351 + -0.2
3,828,351 + +0.3
3,828,351 + +0.9
3,828,352 - -0.3
3,828,352 - -0.9
3,828,491 + AO356_16995 0.20 +0.8
3,828,678 - AO356_16995 0.47 -0.2
3,828,678 - AO356_16995 0.47 +0.4
3,828,678 - AO356_16995 0.47 +0.3
3,828,696 + AO356_16995 0.49 +0.5
3,828,729 + AO356_16995 0.54 +0.6
3,828,729 + AO356_16995 0.54 +0.5
3,828,729 + AO356_16995 0.54 +0.3
3,828,729 + AO356_16995 0.54 -0.2
3,828,730 - AO356_16995 0.54 -1.3
3,828,730 - AO356_16995 0.54 -1.8
3,828,730 - AO356_16995 0.54 -0.1
3,828,838 - AO356_16995 0.70 +0.5
3,828,979 + AO356_16995 0.90 +0.8
3,828,996 + +0.1
3,829,022 + +1.0
3,829,023 - +0.6
3,829,063 + +0.9
3,829,064 - -0.3
3,829,064 - -0.8
3,829,064 - -0.1
3,829,118 - -0.3
3,829,122 + -0.2
3,829,122 + +0.3
3,829,123 - +0.5
3,829,123 - +0.8
3,829,123 - +0.7
3,829,323 + +0.0
3,829,323 + -0.1
3,829,324 - +0.8
3,829,324 - -0.2
3,829,385 + AO356_17000 0.10 -0.0
3,829,386 - AO356_17000 0.10 -1.1
3,829,569 - AO356_17000 0.28 +0.4
3,829,569 - AO356_17000 0.28 +0.6
3,829,569 - AO356_17000 0.28 +0.1
3,829,953 + AO356_17000 0.66 +0.2
3,829,977 + AO356_17000 0.68 -0.7
3,829,977 + AO356_17000 0.68 +0.4
3,829,977 + AO356_17000 0.68 +0.2
3,829,977 + AO356_17000 0.68 -0.8
3,829,978 - AO356_17000 0.69 +0.2
3,829,978 - AO356_17000 0.69 +0.2
3,829,978 - AO356_17000 0.69 +0.5
3,829,978 - AO356_17000 0.69 +0.6
3,829,978 - AO356_17000 0.69 +0.4
3,830,040 + AO356_17000 0.75 -0.9
3,830,071 - AO356_17000 0.78 -0.6
3,830,148 + AO356_17000 0.85 +0.6
3,830,167 - AO356_17000 0.87 -1.0
3,830,234 + +0.4
3,830,321 - -0.1
3,830,349 + -0.5
3,830,349 + +0.8
3,830,349 + +0.2
3,830,350 - +0.5
3,830,350 - -0.4
3,830,350 - -0.7
3,830,350 - +0.8
3,830,350 - +0.3
3,830,350 - +0.2
3,830,350 - +0.1
3,830,373 - +0.9
3,830,373 - +0.9
3,830,417 + +0.3
3,830,417 + -0.2
3,830,418 - +0.8
3,830,520 - +0.6
3,830,520 - +0.4
3,830,563 - +1.6
3,830,631 - AO356_17005 0.10 +0.3
3,830,631 - AO356_17005 0.10 -0.1
3,830,631 - AO356_17005 0.10 +0.3
3,830,631 - AO356_17005 0.10 -0.4
3,830,631 - AO356_17005 0.10 +1.6
3,830,663 + AO356_17005 0.14 -0.5
3,830,664 - AO356_17005 0.14 +0.7
3,830,664 - AO356_17005 0.14 -0.2
3,830,664 - AO356_17005 0.14 +0.8
3,830,879 + AO356_17005 0.37 +1.0
3,830,880 - AO356_17005 0.37 +0.7
3,830,948 + AO356_17005 0.45 +0.1
3,830,949 - AO356_17005 0.45 -1.4
3,830,949 - AO356_17005 0.45 -0.2
3,830,949 - AO356_17005 0.45 +0.8
3,830,978 + AO356_17005 0.48 +0.3
3,830,978 + AO356_17005 0.48 -0.3
3,830,978 + AO356_17005 0.48 +0.1
3,830,979 - AO356_17005 0.48 +0.1
3,830,979 - AO356_17005 0.48 -0.0
3,830,979 - AO356_17005 0.48 -0.8
3,830,979 - AO356_17005 0.48 -0.3
3,831,242 - AO356_17005 0.77 +0.0
3,831,242 - AO356_17005 0.77 +0.5
3,831,242 - AO356_17005 0.77 -1.3
3,831,242 - AO356_17005 0.77 -0.0
3,831,242 - AO356_17005 0.77 +0.2
3,831,260 + AO356_17005 0.79 -1.9
3,831,260 + AO356_17005 0.79 -0.4
3,831,261 - AO356_17005 0.79 +0.1
3,831,263 + AO356_17005 0.79 -1.0
3,831,264 - AO356_17005 0.79 +0.5
3,831,264 - AO356_17005 0.79 -0.2
3,831,264 - AO356_17005 0.79 +0.6
3,831,264 - AO356_17005 0.79 +0.5
3,831,264 - AO356_17005 0.79 -0.8

Or see this region's nucleotide sequence