Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09805

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_09795 and AO356_09800 are separated by 9 nucleotidesAO356_09800 and AO356_09805 are separated by 42 nucleotidesAO356_09805 and AO356_09810 overlap by 1 nucleotidesAO356_09810 and AO356_09815 overlap by 1 nucleotides AO356_09795: AO356_09795 - imidazole glycerol phosphate synthase subunit HisF, at 2,220,811 to 2,221,581 _09795 AO356_09800: AO356_09800 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 2,221,591 to 2,222,328 _09800 AO356_09805: AO356_09805 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 2,222,371 to 2,222,625 _09805 AO356_09810: AO356_09810 - imidazole glycerol phosphate synthase subunit HisH, at 2,222,625 to 2,223,263 _09810 AO356_09815: AO356_09815 - imidazoleglycerol-phosphate dehydratase, at 2,223,263 to 2,223,856 _09815 Position (kb) 2222 2223Strain fitness (log2 ratio) -3 -2 -1 0 1at 2221.386 kb on + strand, within AO356_09795at 2221.387 kb on - strand, within AO356_09795at 2221.602 kb on - strandat 2221.649 kb on + strandat 2221.649 kb on + strandat 2221.833 kb on - strand, within AO356_09800at 2221.888 kb on + strand, within AO356_09800at 2222.030 kb on + strand, within AO356_09800at 2222.030 kb on + strand, within AO356_09800at 2222.030 kb on + strand, within AO356_09800at 2222.030 kb on + strand, within AO356_09800at 2222.030 kb on + strand, within AO356_09800at 2222.051 kb on + strand, within AO356_09800at 2222.051 kb on + strand, within AO356_09800at 2222.051 kb on + strand, within AO356_09800at 2222.051 kb on + strand, within AO356_09800at 2222.051 kb on + strand, within AO356_09800at 2222.052 kb on - strand, within AO356_09800at 2222.052 kb on - strand, within AO356_09800at 2222.052 kb on - strand, within AO356_09800at 2222.052 kb on - strand, within AO356_09800at 2222.284 kb on + strandat 2222.284 kb on + strandat 2222.284 kb on + strandat 2222.284 kb on + strandat 2222.285 kb on - strandat 2222.345 kb on + strandat 2222.345 kb on + strandat 2222.346 kb on - strandat 2222.346 kb on - strandat 2222.346 kb on - strandat 2222.351 kb on + strandat 2222.460 kb on - strand, within AO356_09805at 2222.460 kb on - strand, within AO356_09805at 2222.460 kb on - strand, within AO356_09805at 2222.460 kb on - strand, within AO356_09805at 2222.460 kb on - strand, within AO356_09805at 2222.626 kb on + strandat 2222.626 kb on + strandat 2222.627 kb on - strandat 2222.678 kb on + strandat 2222.797 kb on + strand, within AO356_09810at 2222.797 kb on + strand, within AO356_09810at 2222.797 kb on + strand, within AO356_09810at 2222.797 kb on + strand, within AO356_09810at 2222.798 kb on - strand, within AO356_09810at 2222.798 kb on - strand, within AO356_09810at 2222.798 kb on - strand, within AO356_09810at 2222.798 kb on - strand, within AO356_09810at 2222.798 kb on - strand, within AO356_09810at 2222.800 kb on + strand, within AO356_09810at 2222.800 kb on + strand, within AO356_09810at 2222.800 kb on + strand, within AO356_09810at 2222.800 kb on + strand, within AO356_09810at 2222.800 kb on + strand, within AO356_09810at 2222.800 kb on + strand, within AO356_09810at 2222.800 kb on + strand, within AO356_09810at 2222.801 kb on - strand, within AO356_09810at 2222.801 kb on - strand, within AO356_09810at 2222.801 kb on - strand, within AO356_09810at 2222.801 kb on - strand, within AO356_09810at 2222.816 kb on - strand, within AO356_09810at 2222.816 kb on - strand, within AO356_09810at 2223.264 kb on + strandat 2223.489 kb on + strand, within AO356_09815at 2223.490 kb on - strand, within AO356_09815at 2223.490 kb on - strand, within AO356_09815at 2223.490 kb on - strand, within AO356_09815at 2223.567 kb on + strand, within AO356_09815at 2223.568 kb on - strand, within AO356_09815at 2223.568 kb on - strand, within AO356_09815at 2223.568 kb on - strand, within AO356_09815at 2223.568 kb on - strand, within AO356_09815at 2223.568 kb on - strand, within AO356_09815at 2223.616 kb on + strand, within AO356_09815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
2,221,386 + AO356_09795 0.75 -2.5
2,221,387 - AO356_09795 0.75 -2.4
2,221,602 - -1.1
2,221,649 + -3.2
2,221,649 + -1.0
2,221,833 - AO356_09800 0.33 -1.7
2,221,888 + AO356_09800 0.40 -2.7
2,222,030 + AO356_09800 0.59 -1.7
2,222,030 + AO356_09800 0.59 -2.0
2,222,030 + AO356_09800 0.59 -2.2
2,222,030 + AO356_09800 0.59 -2.7
2,222,030 + AO356_09800 0.59 -1.6
2,222,051 + AO356_09800 0.62 -1.3
2,222,051 + AO356_09800 0.62 -1.1
2,222,051 + AO356_09800 0.62 -2.4
2,222,051 + AO356_09800 0.62 +1.3
2,222,051 + AO356_09800 0.62 -1.4
2,222,052 - AO356_09800 0.62 -1.3
2,222,052 - AO356_09800 0.62 -2.8
2,222,052 - AO356_09800 0.62 -2.1
2,222,052 - AO356_09800 0.62 -2.6
2,222,284 + -2.4
2,222,284 + -2.3
2,222,284 + -2.0
2,222,284 + -2.6
2,222,285 - -1.8
2,222,345 + -1.3
2,222,345 + -2.0
2,222,346 - -2.7
2,222,346 - +0.1
2,222,346 - -0.7
2,222,351 + -1.5
2,222,460 - AO356_09805 0.35 +0.4
2,222,460 - AO356_09805 0.35 -0.0
2,222,460 - AO356_09805 0.35 -0.4
2,222,460 - AO356_09805 0.35 -0.3
2,222,460 - AO356_09805 0.35 -0.0
2,222,626 + -3.0
2,222,626 + -2.0
2,222,627 - +0.4
2,222,678 + -1.8
2,222,797 + AO356_09810 0.27 -2.0
2,222,797 + AO356_09810 0.27 -2.2
2,222,797 + AO356_09810 0.27 -1.5
2,222,797 + AO356_09810 0.27 -1.0
2,222,798 - AO356_09810 0.27 -2.5
2,222,798 - AO356_09810 0.27 -1.2
2,222,798 - AO356_09810 0.27 -1.7
2,222,798 - AO356_09810 0.27 -2.7
2,222,798 - AO356_09810 0.27 -2.3
2,222,800 + AO356_09810 0.27 -2.3
2,222,800 + AO356_09810 0.27 -2.1
2,222,800 + AO356_09810 0.27 -2.3
2,222,800 + AO356_09810 0.27 -2.0
2,222,800 + AO356_09810 0.27 -1.7
2,222,800 + AO356_09810 0.27 -0.3
2,222,800 + AO356_09810 0.27 -2.4
2,222,801 - AO356_09810 0.28 -3.0
2,222,801 - AO356_09810 0.28 -2.6
2,222,801 - AO356_09810 0.28 -1.7
2,222,801 - AO356_09810 0.28 -0.9
2,222,816 - AO356_09810 0.30 -2.5
2,222,816 - AO356_09810 0.30 -1.9
2,223,264 + -2.2
2,223,489 + AO356_09815 0.38 +0.3
2,223,490 - AO356_09815 0.38 -2.7
2,223,490 - AO356_09815 0.38 -2.3
2,223,490 - AO356_09815 0.38 -1.5
2,223,567 + AO356_09815 0.51 -1.4
2,223,568 - AO356_09815 0.51 -3.5
2,223,568 - AO356_09815 0.51 -3.0
2,223,568 - AO356_09815 0.51 -2.9
2,223,568 - AO356_09815 0.51 -3.7
2,223,568 - AO356_09815 0.51 -2.3
2,223,616 + AO356_09815 0.59 -2.0

Or see this region's nucleotide sequence