Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04740

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04735 and AO356_04740 are separated by 832 nucleotidesAO356_04740 and AO356_04745 are separated by 96 nucleotidesAO356_04745 and AO356_04750 are separated by 328 nucleotides AO356_04735: AO356_04735 - hypothetical protein, at 1,063,069 to 1,066,800 _04735 AO356_04740: AO356_04740 - hypothetical protein, at 1,067,633 to 1,068,037 _04740 AO356_04745: AO356_04745 - hypothetical protein, at 1,068,134 to 1,068,637 _04745 AO356_04750: AO356_04750 - diguanylate cyclase, at 1,068,966 to 1,070,315 _04750 Position (kb) 1067 1068 1069Strain fitness (log2 ratio) -2 -1 0 1 2at 1066.659 kb on + strandat 1066.659 kb on + strandat 1066.659 kb on + strandat 1066.659 kb on + strandat 1066.659 kb on + strandat 1066.659 kb on + strandat 1066.660 kb on - strandat 1066.664 kb on - strandat 1066.664 kb on - strandat 1066.701 kb on + strandat 1066.763 kb on - strandat 1066.763 kb on - strandat 1066.763 kb on - strandat 1066.763 kb on - strandat 1066.816 kb on + strandat 1066.825 kb on + strandat 1066.825 kb on + strandat 1066.826 kb on - strandat 1066.826 kb on - strandat 1066.826 kb on - strandat 1066.826 kb on - strandat 1066.826 kb on - strandat 1066.944 kb on + strandat 1066.944 kb on + strandat 1066.957 kb on - strandat 1067.017 kb on + strandat 1067.023 kb on + strandat 1067.023 kb on + strandat 1067.090 kb on + strandat 1067.090 kb on + strandat 1067.090 kb on + strandat 1067.090 kb on + strandat 1067.091 kb on - strandat 1067.091 kb on - strandat 1067.091 kb on - strandat 1067.123 kb on + strandat 1067.124 kb on - strandat 1067.134 kb on + strandat 1067.134 kb on + strandat 1067.163 kb on + strandat 1067.189 kb on - strandat 1067.189 kb on - strandat 1067.203 kb on + strandat 1067.203 kb on + strandat 1067.203 kb on + strandat 1067.203 kb on + strandat 1067.203 kb on + strandat 1067.203 kb on + strandat 1067.203 kb on + strandat 1067.204 kb on - strandat 1067.204 kb on - strandat 1067.204 kb on - strandat 1067.204 kb on - strandat 1067.204 kb on - strandat 1067.204 kb on - strandat 1067.312 kb on - strandat 1067.462 kb on - strandat 1067.462 kb on - strandat 1067.462 kb on - strandat 1067.462 kb on - strandat 1067.566 kb on + strandat 1067.566 kb on + strandat 1067.567 kb on - strandat 1067.567 kb on - strandat 1067.570 kb on + strandat 1067.570 kb on + strandat 1067.571 kb on - strandat 1067.824 kb on + strand, within AO356_04740at 1067.824 kb on + strand, within AO356_04740at 1067.825 kb on - strand, within AO356_04740at 1067.871 kb on + strand, within AO356_04740at 1067.957 kb on + strand, within AO356_04740at 1067.958 kb on - strand, within AO356_04740at 1068.115 kb on + strandat 1068.116 kb on - strandat 1068.221 kb on + strand, within AO356_04745at 1068.221 kb on + strand, within AO356_04745at 1068.445 kb on + strand, within AO356_04745at 1068.445 kb on + strand, within AO356_04745at 1068.446 kb on - strand, within AO356_04745at 1068.453 kb on + strand, within AO356_04745at 1068.453 kb on + strand, within AO356_04745at 1068.454 kb on - strand, within AO356_04745at 1068.454 kb on - strand, within AO356_04745at 1068.454 kb on - strand, within AO356_04745at 1068.654 kb on - strandat 1068.656 kb on + strandat 1068.657 kb on - strandat 1068.657 kb on - strandat 1068.704 kb on + strandat 1068.743 kb on + strandat 1068.743 kb on + strandat 1068.744 kb on - strandat 1068.863 kb on + strandat 1068.864 kb on - strandat 1068.864 kb on - strandat 1068.871 kb on - strandat 1068.898 kb on + strandat 1068.898 kb on + strandat 1068.899 kb on - strandat 1068.899 kb on - strandat 1068.899 kb on - strandat 1068.899 kb on - strandat 1068.899 kb on - strandat 1068.971 kb on + strandat 1068.971 kb on + strandat 1068.971 kb on + strandat 1068.971 kb on + strandat 1068.972 kb on - strandat 1069.007 kb on - strandat 1069.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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1,066,659 + +0.1
1,066,659 + +0.2
1,066,659 + +0.2
1,066,659 + +0.1
1,066,659 + +1.4
1,066,659 + -0.8
1,066,660 - +0.1
1,066,664 - -1.5
1,066,664 - -0.4
1,066,701 + -0.1
1,066,763 - +0.8
1,066,763 - +0.6
1,066,763 - -0.7
1,066,763 - -1.1
1,066,816 + -0.1
1,066,825 + +0.1
1,066,825 + -0.1
1,066,826 - +0.8
1,066,826 - +2.0
1,066,826 - +0.9
1,066,826 - -0.4
1,066,826 - +0.2
1,066,944 + -0.3
1,066,944 + -0.5
1,066,957 - +0.0
1,067,017 + +0.3
1,067,023 + -0.1
1,067,023 + -0.1
1,067,090 + +0.1
1,067,090 + -1.9
1,067,090 + +1.2
1,067,090 + -0.1
1,067,091 - -0.2
1,067,091 - +0.2
1,067,091 - -1.6
1,067,123 + -0.2
1,067,124 - -0.2
1,067,134 + +0.1
1,067,134 + +0.6
1,067,163 + -1.1
1,067,189 - +0.2
1,067,189 - -0.3
1,067,203 + +0.8
1,067,203 + -0.4
1,067,203 + +0.1
1,067,203 + +0.8
1,067,203 + +0.5
1,067,203 + +0.6
1,067,203 + +0.1
1,067,204 - -0.2
1,067,204 - +0.0
1,067,204 - +0.2
1,067,204 - -0.8
1,067,204 - +0.4
1,067,204 - -0.2
1,067,312 - -0.2
1,067,462 - +0.8
1,067,462 - +0.2
1,067,462 - +0.7
1,067,462 - +0.4
1,067,566 + +0.6
1,067,566 + +0.1
1,067,567 - +1.3
1,067,567 - -1.1
1,067,570 + +0.8
1,067,570 + -1.1
1,067,571 - +0.8
1,067,824 + AO356_04740 0.47 +0.6
1,067,824 + AO356_04740 0.47 -0.0
1,067,825 - AO356_04740 0.47 -2.4
1,067,871 + AO356_04740 0.59 +1.3
1,067,957 + AO356_04740 0.80 +0.2
1,067,958 - AO356_04740 0.80 +0.9
1,068,115 + +0.2
1,068,116 - +0.3
1,068,221 + AO356_04745 0.17 +0.8
1,068,221 + AO356_04745 0.17 -0.9
1,068,445 + AO356_04745 0.62 +0.5
1,068,445 + AO356_04745 0.62 -0.8
1,068,446 - AO356_04745 0.62 -0.0
1,068,453 + AO356_04745 0.63 -0.7
1,068,453 + AO356_04745 0.63 +0.2
1,068,454 - AO356_04745 0.63 -0.3
1,068,454 - AO356_04745 0.63 +0.3
1,068,454 - AO356_04745 0.63 +0.2
1,068,654 - +0.4
1,068,656 + +0.7
1,068,657 - +0.2
1,068,657 - -0.5
1,068,704 + +0.2
1,068,743 + +0.4
1,068,743 + +0.7
1,068,744 - +0.0
1,068,863 + +0.9
1,068,864 - +0.5
1,068,864 - +1.2
1,068,871 - +0.1
1,068,898 + -0.7
1,068,898 + +0.2
1,068,899 - +1.0
1,068,899 - -0.1
1,068,899 - +0.5
1,068,899 - +0.7
1,068,899 - +2.4
1,068,971 + -0.1
1,068,971 + +0.4
1,068,971 + +0.6
1,068,971 + +0.8
1,068,972 - +0.7
1,069,007 - -0.2
1,069,007 - +1.2

Or see this region's nucleotide sequence