Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005630

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_005629 and ABIE53_005630 are separated by 72 nucleotidesABIE53_005630 and ABIE53_005631 are separated by 82 nucleotides ABIE53_005629: ABIE53_005629 - 3-hydroxybutyrate dehydrogenase, at 1,925,779 to 1,926,588 _005629 ABIE53_005630: ABIE53_005630 - threonine dehydrogenase-like Zn-dependent dehydrogenase, at 1,926,661 to 1,927,683 _005630 ABIE53_005631: ABIE53_005631 - aldehyde dehydrogenase (NAD+), at 1,927,766 to 1,929,265 _005631 Position (kb) 1926 1927 1928Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1925.710 kb on + strandat 1925.711 kb on - strandat 1925.806 kb on - strandat 1925.807 kb on + strandat 1925.957 kb on - strand, within ABIE53_005629at 1925.976 kb on + strand, within ABIE53_005629at 1926.049 kb on - strand, within ABIE53_005629at 1926.049 kb on - strand, within ABIE53_005629at 1926.053 kb on + strand, within ABIE53_005629at 1926.053 kb on + strand, within ABIE53_005629at 1926.054 kb on - strand, within ABIE53_005629at 1926.054 kb on - strand, within ABIE53_005629at 1926.057 kb on + strand, within ABIE53_005629at 1926.057 kb on + strand, within ABIE53_005629at 1926.058 kb on - strand, within ABIE53_005629at 1926.066 kb on + strand, within ABIE53_005629at 1926.066 kb on + strand, within ABIE53_005629at 1926.085 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.122 kb on + strand, within ABIE53_005629at 1926.123 kb on - strand, within ABIE53_005629at 1926.123 kb on - strand, within ABIE53_005629at 1926.123 kb on - strand, within ABIE53_005629at 1926.123 kb on - strand, within ABIE53_005629at 1926.137 kb on + strand, within ABIE53_005629at 1926.144 kb on + strand, within ABIE53_005629at 1926.145 kb on - strand, within ABIE53_005629at 1926.165 kb on + strand, within ABIE53_005629at 1926.165 kb on + strand, within ABIE53_005629at 1926.166 kb on + strand, within ABIE53_005629at 1926.166 kb on - strand, within ABIE53_005629at 1926.166 kb on - strand, within ABIE53_005629at 1926.186 kb on + strand, within ABIE53_005629at 1926.215 kb on + strand, within ABIE53_005629at 1926.215 kb on + strand, within ABIE53_005629at 1926.215 kb on + strand, within ABIE53_005629at 1926.216 kb on - strand, within ABIE53_005629at 1926.216 kb on - strand, within ABIE53_005629at 1926.268 kb on + strand, within ABIE53_005629at 1926.269 kb on - strand, within ABIE53_005629at 1926.478 kb on + strand, within ABIE53_005629at 1926.478 kb on + strand, within ABIE53_005629at 1926.479 kb on - strand, within ABIE53_005629at 1926.479 kb on - strand, within ABIE53_005629at 1926.506 kb on + strand, within ABIE53_005629at 1926.506 kb on + strand, within ABIE53_005629at 1926.507 kb on - strand, within ABIE53_005629at 1926.632 kb on + strandat 1926.639 kb on + strandat 1926.639 kb on + strandat 1926.639 kb on + strandat 1926.640 kb on - strandat 1926.640 kb on - strandat 1926.640 kb on - strandat 1926.640 kb on - strandat 1926.657 kb on + strandat 1926.657 kb on + strandat 1926.657 kb on + strandat 1926.658 kb on - strandat 1926.660 kb on + strandat 1926.661 kb on - strandat 1926.661 kb on - strandat 1926.661 kb on - strandat 1926.690 kb on + strandat 1926.878 kb on + strand, within ABIE53_005630at 1926.878 kb on + strand, within ABIE53_005630at 1926.878 kb on + strand, within ABIE53_005630at 1926.878 kb on + strand, within ABIE53_005630at 1926.879 kb on - strand, within ABIE53_005630at 1926.879 kb on - strand, within ABIE53_005630at 1926.879 kb on - strand, within ABIE53_005630at 1926.922 kb on + strand, within ABIE53_005630at 1926.922 kb on + strand, within ABIE53_005630at 1926.922 kb on + strand, within ABIE53_005630at 1926.922 kb on + strand, within ABIE53_005630at 1926.922 kb on + strand, within ABIE53_005630at 1926.923 kb on - strand, within ABIE53_005630at 1926.923 kb on - strand, within ABIE53_005630at 1926.923 kb on - strand, within ABIE53_005630at 1926.923 kb on - strand, within ABIE53_005630at 1926.926 kb on - strand, within ABIE53_005630at 1926.926 kb on - strand, within ABIE53_005630at 1926.998 kb on - strand, within ABIE53_005630at 1927.030 kb on + strand, within ABIE53_005630at 1927.030 kb on + strand, within ABIE53_005630at 1927.030 kb on + strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.031 kb on - strand, within ABIE53_005630at 1927.032 kb on + strand, within ABIE53_005630at 1927.032 kb on + strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.033 kb on - strand, within ABIE53_005630at 1927.170 kb on + strand, within ABIE53_005630at 1927.170 kb on + strand, within ABIE53_005630at 1927.170 kb on + strand, within ABIE53_005630at 1927.170 kb on + strand, within ABIE53_005630at 1927.170 kb on + strand, within ABIE53_005630at 1927.269 kb on + strand, within ABIE53_005630at 1927.269 kb on + strand, within ABIE53_005630at 1927.270 kb on - strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.298 kb on + strand, within ABIE53_005630at 1927.299 kb on - strand, within ABIE53_005630at 1927.299 kb on - strand, within ABIE53_005630at 1927.299 kb on - strand, within ABIE53_005630at 1927.316 kb on + strand, within ABIE53_005630at 1927.317 kb on - strand, within ABIE53_005630at 1927.332 kb on + strand, within ABIE53_005630at 1927.512 kb on - strand, within ABIE53_005630at 1927.634 kb on - strandat 1927.682 kb on - strandat 1927.702 kb on + strandat 1927.703 kb on - strandat 1927.734 kb on + strandat 1927.734 kb on + strandat 1927.735 kb on - strandat 1927.735 kb on - strandat 1927.747 kb on - strandat 1927.747 kb on - strandat 1927.819 kb on - strandat 1927.914 kb on + strandat 1927.914 kb on + strandat 1927.914 kb on + strandat 1927.914 kb on + strandat 1927.914 kb on + strandat 1927.914 kb on + strandat 1927.914 kb on + strandat 1927.914 kb on + strandat 1927.914 kb on + strandat 1927.914 kb on + strandat 1927.915 kb on - strandat 1927.915 kb on - strandat 1928.012 kb on + strand, within ABIE53_005631at 1928.012 kb on + strand, within ABIE53_005631at 1928.051 kb on - strand, within ABIE53_005631at 1928.073 kb on + strand, within ABIE53_005631at 1928.073 kb on + strand, within ABIE53_005631at 1928.073 kb on + strand, within ABIE53_005631at 1928.073 kb on + strand, within ABIE53_005631at 1928.074 kb on - strand, within ABIE53_005631at 1928.074 kb on - strand, within ABIE53_005631at 1928.074 kb on - strand, within ABIE53_005631at 1928.236 kb on + strand, within ABIE53_005631at 1928.306 kb on + strand, within ABIE53_005631at 1928.382 kb on + strand, within ABIE53_005631at 1928.382 kb on + strand, within ABIE53_005631at 1928.430 kb on + strand, within ABIE53_005631at 1928.548 kb on + strand, within ABIE53_005631at 1928.549 kb on - strand, within ABIE53_005631at 1928.562 kb on + strand, within ABIE53_005631at 1928.563 kb on - strand, within ABIE53_005631at 1928.563 kb on - strand, within ABIE53_005631at 1928.563 kb on - strand, within ABIE53_005631at 1928.563 kb on - strand, within ABIE53_005631at 1928.594 kb on - strand, within ABIE53_005631

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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1,925,710 + +1.3
1,925,711 - -0.5
1,925,806 - -0.7
1,925,807 + +0.6
1,925,957 - ABIE53_005629 0.22 -0.6
1,925,976 + ABIE53_005629 0.24 +0.2
1,926,049 - ABIE53_005629 0.33 -0.3
1,926,049 - ABIE53_005629 0.33 -0.9
1,926,053 + ABIE53_005629 0.34 -1.0
1,926,053 + ABIE53_005629 0.34 -1.2
1,926,054 - ABIE53_005629 0.34 -0.9
1,926,054 - ABIE53_005629 0.34 -0.6
1,926,057 + ABIE53_005629 0.34 +0.1
1,926,057 + ABIE53_005629 0.34 +0.9
1,926,058 - ABIE53_005629 0.34 -0.5
1,926,066 + ABIE53_005629 0.35 +0.7
1,926,066 + ABIE53_005629 0.35 +1.1
1,926,085 + ABIE53_005629 0.38 -0.3
1,926,122 + ABIE53_005629 0.42 -0.5
1,926,122 + ABIE53_005629 0.42 -0.4
1,926,122 + ABIE53_005629 0.42 +0.0
1,926,122 + ABIE53_005629 0.42 -0.8
1,926,122 + ABIE53_005629 0.42 -0.4
1,926,122 + ABIE53_005629 0.42 +0.3
1,926,122 + ABIE53_005629 0.42 +1.6
1,926,123 - ABIE53_005629 0.42 -1.3
1,926,123 - ABIE53_005629 0.42 -1.1
1,926,123 - ABIE53_005629 0.42 -0.6
1,926,123 - ABIE53_005629 0.42 -0.5
1,926,137 + ABIE53_005629 0.44 -0.1
1,926,144 + ABIE53_005629 0.45 -0.1
1,926,145 - ABIE53_005629 0.45 +0.1
1,926,165 + ABIE53_005629 0.48 -0.7
1,926,165 + ABIE53_005629 0.48 -0.7
1,926,166 + ABIE53_005629 0.48 -0.5
1,926,166 - ABIE53_005629 0.48 -0.4
1,926,166 - ABIE53_005629 0.48 -0.5
1,926,186 + ABIE53_005629 0.50 +0.3
1,926,215 + ABIE53_005629 0.54 +0.4
1,926,215 + ABIE53_005629 0.54 +0.6
1,926,215 + ABIE53_005629 0.54 -0.5
1,926,216 - ABIE53_005629 0.54 +0.1
1,926,216 - ABIE53_005629 0.54 +0.8
1,926,268 + ABIE53_005629 0.60 -0.8
1,926,269 - ABIE53_005629 0.60 +0.1
1,926,478 + ABIE53_005629 0.86 -0.1
1,926,478 + ABIE53_005629 0.86 +0.7
1,926,479 - ABIE53_005629 0.86 -0.3
1,926,479 - ABIE53_005629 0.86 -1.3
1,926,506 + ABIE53_005629 0.90 -0.3
1,926,506 + ABIE53_005629 0.90 -0.1
1,926,507 - ABIE53_005629 0.90 -0.8
1,926,632 + +0.3
1,926,639 + +1.1
1,926,639 + +3.7
1,926,639 + +1.1
1,926,640 - -0.0
1,926,640 - +0.1
1,926,640 - -0.7
1,926,640 - -0.6
1,926,657 + -1.2
1,926,657 + -0.3
1,926,657 + -0.6
1,926,658 - +0.1
1,926,660 + -0.8
1,926,661 - -1.2
1,926,661 - +1.0
1,926,661 - -0.5
1,926,690 + -1.0
1,926,878 + ABIE53_005630 0.21 -0.9
1,926,878 + ABIE53_005630 0.21 -0.0
1,926,878 + ABIE53_005630 0.21 -1.0
1,926,878 + ABIE53_005630 0.21 -0.2
1,926,879 - ABIE53_005630 0.21 -0.1
1,926,879 - ABIE53_005630 0.21 +0.5
1,926,879 - ABIE53_005630 0.21 -0.5
1,926,922 + ABIE53_005630 0.26 -0.6
1,926,922 + ABIE53_005630 0.26 +0.7
1,926,922 + ABIE53_005630 0.26 +1.7
1,926,922 + ABIE53_005630 0.26 +1.0
1,926,922 + ABIE53_005630 0.26 +0.2
1,926,923 - ABIE53_005630 0.26 -0.3
1,926,923 - ABIE53_005630 0.26 -0.5
1,926,923 - ABIE53_005630 0.26 +1.2
1,926,923 - ABIE53_005630 0.26 -1.8
1,926,926 - ABIE53_005630 0.26 +0.4
1,926,926 - ABIE53_005630 0.26 -0.3
1,926,998 - ABIE53_005630 0.33 +0.4
1,927,030 + ABIE53_005630 0.36 +1.5
1,927,030 + ABIE53_005630 0.36 -0.6
1,927,030 + ABIE53_005630 0.36 +2.1
1,927,031 - ABIE53_005630 0.36 -2.4
1,927,031 - ABIE53_005630 0.36 -1.7
1,927,031 - ABIE53_005630 0.36 -1.5
1,927,031 - ABIE53_005630 0.36 +0.0
1,927,031 - ABIE53_005630 0.36 +0.5
1,927,031 - ABIE53_005630 0.36 +0.0
1,927,032 + ABIE53_005630 0.36 -0.1
1,927,032 + ABIE53_005630 0.36 -1.7
1,927,033 - ABIE53_005630 0.36 +0.7
1,927,033 - ABIE53_005630 0.36 -0.3
1,927,033 - ABIE53_005630 0.36 +0.4
1,927,033 - ABIE53_005630 0.36 +0.1
1,927,033 - ABIE53_005630 0.36 -0.4
1,927,033 - ABIE53_005630 0.36 -0.5
1,927,170 + ABIE53_005630 0.50 -1.3
1,927,170 + ABIE53_005630 0.50 -0.5
1,927,170 + ABIE53_005630 0.50 -0.3
1,927,170 + ABIE53_005630 0.50 +0.0
1,927,170 + ABIE53_005630 0.50 -0.5
1,927,269 + ABIE53_005630 0.59 +0.7
1,927,269 + ABIE53_005630 0.59 -1.0
1,927,270 - ABIE53_005630 0.60 +0.9
1,927,298 + ABIE53_005630 0.62 +0.6
1,927,298 + ABIE53_005630 0.62 +0.1
1,927,298 + ABIE53_005630 0.62 +1.1
1,927,298 + ABIE53_005630 0.62 +1.5
1,927,298 + ABIE53_005630 0.62 -1.3
1,927,298 + ABIE53_005630 0.62 -0.0
1,927,298 + ABIE53_005630 0.62 -0.4
1,927,298 + ABIE53_005630 0.62 +0.1
1,927,299 - ABIE53_005630 0.62 -0.6
1,927,299 - ABIE53_005630 0.62 +2.1
1,927,299 - ABIE53_005630 0.62 -1.1
1,927,316 + ABIE53_005630 0.64 -0.9
1,927,317 - ABIE53_005630 0.64 -0.5
1,927,332 + ABIE53_005630 0.66 +1.8
1,927,512 - ABIE53_005630 0.83 +1.1
1,927,634 - +1.2
1,927,682 - -0.4
1,927,702 + -0.5
1,927,703 - -1.3
1,927,734 + -0.9
1,927,734 + -0.3
1,927,735 - -0.2
1,927,735 - +0.8
1,927,747 - -0.6
1,927,747 - -0.7
1,927,819 - -0.4
1,927,914 + -1.4
1,927,914 + -0.0
1,927,914 + +1.4
1,927,914 + -1.1
1,927,914 + +0.2
1,927,914 + +0.7
1,927,914 + -1.1
1,927,914 + -0.0
1,927,914 + -1.1
1,927,914 + -1.2
1,927,915 - -0.3
1,927,915 - -0.9
1,928,012 + ABIE53_005631 0.16 -1.7
1,928,012 + ABIE53_005631 0.16 -0.6
1,928,051 - ABIE53_005631 0.19 +0.3
1,928,073 + ABIE53_005631 0.20 -1.0
1,928,073 + ABIE53_005631 0.20 -0.8
1,928,073 + ABIE53_005631 0.20 +1.2
1,928,073 + ABIE53_005631 0.20 +0.1
1,928,074 - ABIE53_005631 0.21 +0.7
1,928,074 - ABIE53_005631 0.21 -0.1
1,928,074 - ABIE53_005631 0.21 +0.9
1,928,236 + ABIE53_005631 0.31 -0.6
1,928,306 + ABIE53_005631 0.36 -1.2
1,928,382 + ABIE53_005631 0.41 +0.5
1,928,382 + ABIE53_005631 0.41 -0.1
1,928,430 + ABIE53_005631 0.44 -2.4
1,928,548 + ABIE53_005631 0.52 -1.2
1,928,549 - ABIE53_005631 0.52 -0.3
1,928,562 + ABIE53_005631 0.53 -0.1
1,928,563 - ABIE53_005631 0.53 +1.0
1,928,563 - ABIE53_005631 0.53 -0.9
1,928,563 - ABIE53_005631 0.53 +0.6
1,928,563 - ABIE53_005631 0.53 +2.2
1,928,594 - ABIE53_005631 0.55 +0.9

Or see this region's nucleotide sequence