Strain Fitness in Sinorhizobium meliloti 1021 around SMc03235

Experiment: LB, pH6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03234 and SMc03235 are separated by 35 nucleotidesSMc03235 and SMc03236 are separated by 2 nucleotidesSMc03236 and SMc03237 are separated by 177 nucleotides SMc03234: SMc03234 - hypothetical protein, at 3,342,722 to 3,344,359 SMc03234 SMc03235: SMc03235 - hypothetical protein, at 3,344,395 to 3,344,874 SMc03235 SMc03236: SMc03236 - glutamine amidotransferase, at 3,344,877 to 3,345,635 SMc03236 SMc03237: SMc03237 - transport transmembrane protein, at 3,345,813 to 3,347,060 SMc03237 Position (kb) 3344 3345Strain fitness (log2 ratio) -2 -1 0 1at 3344.375 kb on + strandat 3344.375 kb on + strandat 3344.563 kb on + strand, within SMc03235at 3344.563 kb on + strand, within SMc03235at 3344.563 kb on + strand, within SMc03235at 3344.564 kb on - strand, within SMc03235at 3344.564 kb on - strand, within SMc03235at 3344.639 kb on - strand, within SMc03235at 3344.657 kb on + strand, within SMc03235at 3344.658 kb on - strand, within SMc03235at 3345.309 kb on + strand, within SMc03236at 3345.309 kb on + strand, within SMc03236at 3345.375 kb on + strand, within SMc03236

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
remove
3,344,375 + +0.0
3,344,375 + -2.2
3,344,563 + SMc03235 0.35 -0.9
3,344,563 + SMc03235 0.35 -2.0
3,344,563 + SMc03235 0.35 -1.0
3,344,564 - SMc03235 0.35 -1.4
3,344,564 - SMc03235 0.35 -1.2
3,344,639 - SMc03235 0.51 +1.1
3,344,657 + SMc03235 0.55 -1.1
3,344,658 - SMc03235 0.55 +0.4
3,345,309 + SMc03236 0.57 +0.4
3,345,309 + SMc03236 0.57 +0.7
3,345,375 + SMc03236 0.66 -0.3

Or see this region's nucleotide sequence