Strain Fitness in Sinorhizobium meliloti 1021 around SMc03103

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03104 and SMc03103 are separated by 345 nucleotidesSMc03103 and SMc03102 are separated by 15 nucleotides SMc03104: SMc03104 - 5-aminolevulinate synthase, at 3,237,290 to 3,238,507 SMc03104 SMc03103: SMc03103 - carbon monoxide dehydrogenase medium subunit transmembrane protein, at 3,238,853 to 3,239,650 SMc03103 SMc03102: SMc03102 - carbon monoxide dehydrogenase large subunit transmembrane protein, at 3,239,666 to 3,242,011 SMc03102 Position (kb) 3238 3239 3240Strain fitness (log2 ratio) -1 0 1 2at 3238.697 kb on + strandat 3238.698 kb on - strandat 3238.925 kb on - strandat 3239.103 kb on + strand, within SMc03103at 3239.134 kb on - strand, within SMc03103at 3239.330 kb on - strand, within SMc03103at 3239.357 kb on + strand, within SMc03103at 3239.357 kb on + strand, within SMc03103at 3239.358 kb on - strand, within SMc03103at 3239.358 kb on - strand, within SMc03103at 3239.572 kb on - strandat 3239.572 kb on - strandat 3239.635 kb on - strandat 3239.646 kb on + strandat 3239.646 kb on + strandat 3239.647 kb on - strandat 3239.647 kb on - strandat 3239.647 kb on - strandat 3239.647 kb on - strandat 3239.647 kb on - strandat 3239.647 kb on - strandat 3239.677 kb on + strandat 3239.678 kb on - strandat 3239.678 kb on - strandat 3239.833 kb on + strandat 3239.886 kb on + strandat 3239.887 kb on - strandat 3239.895 kb on + strandat 3239.895 kb on + strandat 3239.896 kb on - strandat 3239.896 kb on - strandat 3239.928 kb on + strand, within SMc03102at 3239.928 kb on + strand, within SMc03102at 3239.929 kb on - strand, within SMc03102at 3240.013 kb on + strand, within SMc03102at 3240.014 kb on - strand, within SMc03102at 3240.093 kb on + strand, within SMc03102at 3240.093 kb on + strand, within SMc03102at 3240.129 kb on + strand, within SMc03102at 3240.129 kb on + strand, within SMc03102at 3240.129 kb on + strand, within SMc03102at 3240.176 kb on - strand, within SMc03102at 3240.187 kb on - strand, within SMc03102at 3240.378 kb on + strand, within SMc03102at 3240.378 kb on + strand, within SMc03102at 3240.379 kb on - strand, within SMc03102at 3240.379 kb on - strand, within SMc03102at 3240.379 kb on - strand, within SMc03102at 3240.379 kb on - strand, within SMc03102at 3240.628 kb on + strand, within SMc03102at 3240.629 kb on - strand, within SMc03102at 3240.629 kb on - strand, within SMc03102at 3240.630 kb on + strand, within SMc03102at 3240.630 kb on + strand, within SMc03102at 3240.631 kb on - strand, within SMc03102

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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3,238,697 + -0.2
3,238,698 - -0.2
3,238,925 - +0.8
3,239,103 + SMc03103 0.31 -1.3
3,239,134 - SMc03103 0.35 -0.6
3,239,330 - SMc03103 0.60 -1.1
3,239,357 + SMc03103 0.63 -0.2
3,239,357 + SMc03103 0.63 +0.0
3,239,358 - SMc03103 0.63 -1.1
3,239,358 - SMc03103 0.63 +0.1
3,239,572 - +1.1
3,239,572 - +0.2
3,239,635 - +0.2
3,239,646 + -0.7
3,239,646 + -0.5
3,239,647 - -0.6
3,239,647 - +0.0
3,239,647 - +0.1
3,239,647 - +0.1
3,239,647 - -0.8
3,239,647 - -0.3
3,239,677 + -0.8
3,239,678 - -0.1
3,239,678 - -0.0
3,239,833 + +0.8
3,239,886 + +0.7
3,239,887 - -0.6
3,239,895 + -0.3
3,239,895 + -1.2
3,239,896 - +0.4
3,239,896 - +0.4
3,239,928 + SMc03102 0.11 -0.2
3,239,928 + SMc03102 0.11 +0.1
3,239,929 - SMc03102 0.11 -1.0
3,240,013 + SMc03102 0.15 -1.6
3,240,014 - SMc03102 0.15 -0.2
3,240,093 + SMc03102 0.18 -1.1
3,240,093 + SMc03102 0.18 +0.2
3,240,129 + SMc03102 0.20 -0.5
3,240,129 + SMc03102 0.20 +0.0
3,240,129 + SMc03102 0.20 -0.4
3,240,176 - SMc03102 0.22 +0.2
3,240,187 - SMc03102 0.22 +2.0
3,240,378 + SMc03102 0.30 +0.7
3,240,378 + SMc03102 0.30 -0.1
3,240,379 - SMc03102 0.30 -0.6
3,240,379 - SMc03102 0.30 +1.6
3,240,379 - SMc03102 0.30 -1.1
3,240,379 - SMc03102 0.30 -0.3
3,240,628 + SMc03102 0.41 -0.6
3,240,629 - SMc03102 0.41 +0.2
3,240,629 - SMc03102 0.41 -0.3
3,240,630 + SMc03102 0.41 -0.5
3,240,630 + SMc03102 0.41 +0.8
3,240,631 - SMc03102 0.41 +0.0

Or see this region's nucleotide sequence