Strain Fitness in Sinorhizobium meliloti 1021 around SMc02698

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02696 and SMc02697 overlap by 4 nucleotidesSMc02697 and SMc02698 are separated by 45 nucleotidesSMc02698 and SMc02699 are separated by 174 nucleotidesSMc02699 and SMc02700 are separated by 18 nucleotides SMc02696: SMc02696 - hypothetical protein, at 2,546,152 to 2,546,607 SMc02696 SMc02697: SMc02697 - hypothetical protein, at 2,546,604 to 2,547,074 SMc02697 SMc02698: SMc02698 - adenine phosphoribosyltransferase, at 2,547,120 to 2,547,662 SMc02698 SMc02699: SMc02699 - hypothetical protein, at 2,547,837 to 2,548,022 SMc02699 SMc02700: SMc02700 - hypothetical protein, at 2,548,041 to 2,549,300 SMc02700 Position (kb) 2547 2548Strain fitness (log2 ratio) -1 0 1 2at 2546.158 kb on + strandat 2546.259 kb on + strand, within SMc02696at 2546.260 kb on - strand, within SMc02696at 2546.260 kb on - strand, within SMc02696at 2546.260 kb on - strand, within SMc02696at 2546.260 kb on - strand, within SMc02696at 2546.439 kb on + strand, within SMc02696at 2546.440 kb on - strand, within SMc02696at 2546.559 kb on - strand, within SMc02696at 2546.625 kb on + strandat 2546.626 kb on - strandat 2546.950 kb on + strand, within SMc02697at 2546.950 kb on + strand, within SMc02697at 2547.100 kb on + strandat 2547.100 kb on + strandat 2547.105 kb on + strandat 2547.106 kb on - strandat 2547.106 kb on - strandat 2547.136 kb on + strandat 2547.423 kb on + strand, within SMc02698at 2547.423 kb on + strand, within SMc02698at 2547.468 kb on - strand, within SMc02698at 2547.468 kb on - strand, within SMc02698at 2547.517 kb on + strand, within SMc02698at 2547.705 kb on + strandat 2547.705 kb on + strandat 2547.705 kb on + strandat 2547.705 kb on + strandat 2547.706 kb on - strandat 2547.706 kb on - strandat 2547.706 kb on - strandat 2547.706 kb on - strandat 2547.706 kb on - strandat 2547.789 kb on + strandat 2547.820 kb on + strandat 2547.820 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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2,546,158 + -0.7
2,546,259 + SMc02696 0.23 -1.0
2,546,260 - SMc02696 0.24 +1.4
2,546,260 - SMc02696 0.24 -0.0
2,546,260 - SMc02696 0.24 -0.7
2,546,260 - SMc02696 0.24 -0.2
2,546,439 + SMc02696 0.63 -0.9
2,546,440 - SMc02696 0.63 -0.2
2,546,559 - SMc02696 0.89 -0.2
2,546,625 + +0.2
2,546,626 - -0.8
2,546,950 + SMc02697 0.73 -0.7
2,546,950 + SMc02697 0.73 +2.1
2,547,100 + -1.6
2,547,100 + -0.0
2,547,105 + -0.3
2,547,106 - +0.2
2,547,106 - +0.2
2,547,136 + +0.2
2,547,423 + SMc02698 0.56 -1.0
2,547,423 + SMc02698 0.56 +0.7
2,547,468 - SMc02698 0.64 -1.1
2,547,468 - SMc02698 0.64 -0.7
2,547,517 + SMc02698 0.73 +0.2
2,547,705 + +1.1
2,547,705 + -1.0
2,547,705 + +1.1
2,547,705 + -1.1
2,547,706 - +0.4
2,547,706 - -0.8
2,547,706 - +0.0
2,547,706 - -0.1
2,547,706 - +0.1
2,547,789 + -0.4
2,547,820 + +1.7
2,547,820 + +1.1

Or see this region's nucleotide sequence