Strain Fitness in Sinorhizobium meliloti 1021 around SMc02366

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02365 and SMc02366 are separated by 146 nucleotidesSMc02366 and SMc02367 overlap by 4 nucleotides SMc02365: SMc02365 - protease precursor protein, at 1,112,257 to 1,113,771 SMc02365 SMc02366: SMc02366 - transcriptional regulator, at 1,113,918 to 1,114,619 SMc02366 SMc02367: SMc02367 - sensor histidine kinase transmembrane protein, at 1,114,616 to 1,116,013 SMc02367 Position (kb) 1113 1114 1115Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9 10at 1112.941 kb on + strand, within SMc02365at 1112.950 kb on + strand, within SMc02365at 1112.950 kb on + strand, within SMc02365at 1113.182 kb on - strand, within SMc02365at 1113.820 kb on + strandat 1113.820 kb on + strandat 1113.820 kb on + strandat 1113.820 kb on + strandat 1113.820 kb on + strandat 1113.820 kb on + strandat 1113.821 kb on - strandat 1113.821 kb on - strandat 1113.821 kb on - strandat 1113.918 kb on - strandat 1113.918 kb on - strandat 1113.918 kb on - strandat 1113.918 kb on - strandat 1113.972 kb on + strandat 1113.972 kb on + strandat 1113.973 kb on - strandat 1113.973 kb on - strandat 1113.973 kb on - strandat 1114.039 kb on + strand, within SMc02366at 1114.039 kb on + strand, within SMc02366at 1114.040 kb on - strand, within SMc02366at 1114.040 kb on - strand, within SMc02366at 1114.063 kb on - strand, within SMc02366at 1114.063 kb on - strand, within SMc02366at 1114.221 kb on + strand, within SMc02366at 1114.221 kb on + strand, within SMc02366at 1114.221 kb on + strand, within SMc02366at 1114.222 kb on - strand, within SMc02366at 1114.236 kb on + strand, within SMc02366at 1114.237 kb on - strand, within SMc02366at 1114.237 kb on - strand, within SMc02366at 1114.284 kb on - strand, within SMc02366at 1114.312 kb on - strand, within SMc02366at 1114.411 kb on - strand, within SMc02366at 1114.473 kb on + strand, within SMc02366at 1114.473 kb on + strand, within SMc02366at 1114.473 kb on + strand, within SMc02366at 1114.473 kb on + strand, within SMc02366at 1114.473 kb on + strand, within SMc02366at 1114.474 kb on - strand, within SMc02366at 1114.584 kb on + strandat 1114.584 kb on + strandat 1114.585 kb on - strandat 1114.585 kb on - strandat 1114.712 kb on + strandat 1114.712 kb on + strandat 1114.712 kb on + strandat 1114.713 kb on - strandat 1114.776 kb on + strand, within SMc02367at 1114.797 kb on - strand, within SMc02367at 1114.797 kb on - strand, within SMc02367at 1114.869 kb on - strand, within SMc02367at 1115.052 kb on + strand, within SMc02367at 1115.053 kb on - strand, within SMc02367at 1115.358 kb on + strand, within SMc02367at 1115.358 kb on + strand, within SMc02367at 1115.358 kb on + strand, within SMc02367at 1115.359 kb on - strand, within SMc02367at 1115.488 kb on + strand, within SMc02367at 1115.489 kb on - strand, within SMc02367at 1115.489 kb on - strand, within SMc02367

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,112,941 + SMc02365 0.45 +9.1
1,112,950 + SMc02365 0.46 +7.9
1,112,950 + SMc02365 0.46 +8.0
1,113,182 - SMc02365 0.61 +0.3
1,113,820 + +9.5
1,113,820 + +9.9
1,113,820 + +9.3
1,113,820 + +9.0
1,113,820 + +9.4
1,113,820 + +8.9
1,113,821 - +2.4
1,113,821 - +2.3
1,113,821 - -0.7
1,113,918 - +9.4
1,113,918 - +9.3
1,113,918 - +9.4
1,113,918 - +9.5
1,113,972 + +9.2
1,113,972 + +8.4
1,113,973 - +9.3
1,113,973 - +9.0
1,113,973 - +9.3
1,114,039 + SMc02366 0.17 +9.5
1,114,039 + SMc02366 0.17 +9.5
1,114,040 - SMc02366 0.17 +9.4
1,114,040 - SMc02366 0.17 +9.3
1,114,063 - SMc02366 0.21 +9.3
1,114,063 - SMc02366 0.21 +9.3
1,114,221 + SMc02366 0.43 +9.6
1,114,221 + SMc02366 0.43 +9.4
1,114,221 + SMc02366 0.43 +9.5
1,114,222 - SMc02366 0.43 +9.4
1,114,236 + SMc02366 0.45 +8.9
1,114,237 - SMc02366 0.45 +9.6
1,114,237 - SMc02366 0.45 +9.4
1,114,284 - SMc02366 0.52 +9.3
1,114,312 - SMc02366 0.56 +9.5
1,114,411 - SMc02366 0.70 +9.0
1,114,473 + SMc02366 0.79 +9.6
1,114,473 + SMc02366 0.79 +9.7
1,114,473 + SMc02366 0.79 +9.4
1,114,473 + SMc02366 0.79 +9.7
1,114,473 + SMc02366 0.79 +9.7
1,114,474 - SMc02366 0.79 +9.5
1,114,584 + +9.6
1,114,584 + +9.5
1,114,585 - +9.7
1,114,585 - +9.4
1,114,712 + +9.6
1,114,712 + +9.7
1,114,712 + +9.8
1,114,713 - +9.5
1,114,776 + SMc02367 0.11 +9.3
1,114,797 - SMc02367 0.13 +9.5
1,114,797 - SMc02367 0.13 +9.9
1,114,869 - SMc02367 0.18 +9.7
1,115,052 + SMc02367 0.31 +9.1
1,115,053 - SMc02367 0.31 +8.8
1,115,358 + SMc02367 0.53 +9.6
1,115,358 + SMc02367 0.53 +10.5
1,115,358 + SMc02367 0.53 +9.0
1,115,359 - SMc02367 0.53 +9.4
1,115,488 + SMc02367 0.62 +9.7
1,115,489 - SMc02367 0.62 +9.5
1,115,489 - SMc02367 0.62 +9.6

Or see this region's nucleotide sequence