Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02274 and SMc02275 are separated by 309 nucleotides SMc02275 and SMc02276 are separated by 116 nucleotides
SMc02274: SMc02274 - capsule polysaccharide exporter protein, at 648,454 to 649,677
SMc02274
SMc02275: SMc02275 - pyrazinamidase/nicotinamidase (Includes: pyrazinamidase, nicotinamidase) protein, at 649,987 to 650,622
SMc02275
SMc02276: SMc02276 - nicotinate phosphoribosyltransferase, at 650,739 to 652,043
SMc02276
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 649.687 kb on - strand at 649.687 kb on - strand at 649.778 kb on - strand at 649.779 kb on + strand at 649.780 kb on - strand at 649.845 kb on + strand at 649.845 kb on + strand at 649.845 kb on + strand at 649.845 kb on + strand at 649.846 kb on - strand at 649.911 kb on + strand at 649.916 kb on + strand at 649.916 kb on + strand at 649.917 kb on - strand at 649.919 kb on + strand at 649.942 kb on + strand at 649.942 kb on + strand at 650.052 kb on + strand, within SMc02275 at 650.339 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.674 kb on + strand at 650.733 kb on + strand at 650.733 kb on + strand at 650.733 kb on + strand at 650.733 kb on + strand at 650.734 kb on - strand at 650.734 kb on - strand at 650.752 kb on - strand at 650.769 kb on + strand at 650.769 kb on + strand at 650.769 kb on + strand at 650.769 kb on + strand at 650.770 kb on - strand at 650.770 kb on - strand at 650.770 kb on - strand at 650.770 kb on - strand at 650.770 kb on - strand at 650.778 kb on - strand at 650.778 kb on - strand at 650.778 kb on - strand at 650.826 kb on + strand at 650.827 kb on - strand at 650.999 kb on - strand, within SMc02276 at 650.999 kb on - strand, within SMc02276 at 650.999 kb on - strand, within SMc02276 at 651.021 kb on + strand, within SMc02276 at 651.022 kb on - strand, within SMc02276 at 651.244 kb on - strand, within SMc02276 at 651.346 kb on + strand, within SMc02276 at 651.525 kb on + strand, within SMc02276 at 651.526 kb on - strand, within SMc02276
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 649,687 - +1.3 649,687 - -0.1 649,778 - +0.5 649,779 + +0.9 649,780 - +0.2 649,845 + +2.5 649,845 + +0.3 649,845 + -1.3 649,845 + +1.2 649,846 - -0.9 649,911 + -0.6 649,916 + +0.9 649,916 + +0.9 649,917 - -0.8 649,919 + +0.1 649,942 + -0.8 649,942 + -1.6 650,052 + SMc02275 0.10 -1.2 650,339 + SMc02275 0.55 +1.0 650,441 + SMc02275 0.71 +1.1 650,441 + SMc02275 0.71 -0.9 650,441 + SMc02275 0.71 -1.0 650,441 + SMc02275 0.71 -0.1 650,620 + +1.4 650,620 + +0.3 650,620 + +1.7 650,674 + +0.4 650,733 + -1.3 650,733 + -1.8 650,733 + +1.6 650,733 + +0.1 650,734 - +0.6 650,734 - -0.9 650,752 - -0.6 650,769 + +0.4 650,769 + -1.2 650,769 + -0.4 650,769 + +0.9 650,770 - -1.9 650,770 - +0.3 650,770 - +0.6 650,770 - -2.9 650,770 - -1.1 650,778 - -0.5 650,778 - +0.4 650,778 - +0.7 650,826 + -0.6 650,827 - -0.9 650,999 - SMc02276 0.20 -0.7 650,999 - SMc02276 0.20 -1.3 650,999 - SMc02276 0.20 +1.2 651,021 + SMc02276 0.22 -0.5 651,022 - SMc02276 0.22 -1.1 651,244 - SMc02276 0.39 +0.1 651,346 + SMc02276 0.47 -0.9 651,525 + SMc02276 0.60 -1.3 651,526 - SMc02276 0.60 +1.8
Or see this region's nucleotide sequence