Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02273 and SMc02274 are separated by 367 nucleotides SMc02274 and SMc02275 are separated by 309 nucleotides
SMc02273: SMc02273 - fatty acid synthase transmembrane protein, at 640,572 to 648,086
SMc02273
SMc02274: SMc02274 - capsule polysaccharide exporter protein, at 648,454 to 649,677
SMc02274
SMc02275: SMc02275 - pyrazinamidase/nicotinamidase (Includes: pyrazinamidase, nicotinamidase) protein, at 649,987 to 650,622
SMc02275
Position (kb)
648
649
650 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 647.490 kb on - strand at 647.628 kb on - strand at 647.668 kb on + strand at 647.668 kb on + strand at 647.669 kb on - strand at 647.734 kb on + strand at 647.735 kb on - strand at 647.735 kb on - strand at 647.834 kb on + strand at 647.835 kb on - strand at 647.835 kb on - strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.836 kb on + strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.837 kb on - strand at 647.884 kb on + strand at 647.884 kb on + strand at 647.884 kb on + strand at 647.884 kb on + strand at 647.889 kb on - strand at 647.889 kb on - strand at 647.917 kb on + strand at 647.918 kb on - strand at 648.069 kb on + strand at 648.088 kb on + strand at 648.088 kb on + strand at 648.088 kb on + strand at 648.088 kb on + strand at 648.088 kb on + strand at 648.088 kb on + strand at 648.089 kb on - strand at 648.194 kb on - strand at 648.208 kb on - strand at 648.210 kb on + strand at 648.210 kb on + strand at 648.222 kb on - strand at 648.222 kb on - strand at 648.228 kb on + strand at 648.228 kb on + strand at 648.229 kb on - strand at 648.256 kb on + strand at 648.260 kb on + strand at 648.260 kb on + strand at 648.262 kb on + strand at 648.262 kb on + strand at 648.262 kb on + strand at 648.263 kb on - strand at 648.263 kb on - strand at 648.263 kb on - strand at 648.285 kb on + strand at 648.285 kb on + strand at 648.285 kb on + strand at 648.286 kb on - strand at 648.286 kb on - strand at 648.306 kb on + strand at 648.313 kb on + strand at 648.350 kb on + strand at 648.447 kb on + strand at 648.453 kb on + strand at 649.687 kb on - strand at 649.687 kb on - strand at 649.778 kb on - strand at 649.779 kb on + strand at 649.780 kb on - strand at 649.845 kb on + strand at 649.845 kb on + strand at 649.845 kb on + strand at 649.845 kb on + strand at 649.846 kb on - strand at 649.911 kb on + strand at 649.916 kb on + strand at 649.916 kb on + strand at 649.917 kb on - strand at 649.919 kb on + strand at 649.942 kb on + strand at 649.942 kb on + strand at 650.052 kb on + strand, within SMc02275 at 650.339 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.441 kb on + strand, within SMc02275 at 650.620 kb on + strand at 650.620 kb on + strand at 650.620 kb on + strand at 650.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 647,490 - +0.9 647,628 - -0.5 647,668 + +0.5 647,668 + +1.3 647,669 - +0.9 647,734 + +0.3 647,735 - +0.4 647,735 - +0.3 647,834 + +1.1 647,835 - -0.2 647,835 - +0.0 647,836 + -0.2 647,836 + +0.7 647,836 + -0.6 647,836 + +0.7 647,836 + -1.4 647,836 + -0.7 647,836 + +0.6 647,836 + +5.6 647,836 + -2.1 647,837 - +0.9 647,837 - +0.7 647,837 - +0.5 647,837 - -1.2 647,837 - -0.1 647,837 - -0.9 647,837 - +1.0 647,837 - -0.0 647,837 - +0.6 647,837 - +1.5 647,837 - +0.7 647,837 - -1.4 647,837 - +0.2 647,884 + +0.3 647,884 + +0.5 647,884 + +0.8 647,884 + +0.1 647,889 - +0.7 647,889 - -0.2 647,917 + +0.1 647,918 - +0.6 648,069 + +0.1 648,088 + +0.4 648,088 + +0.4 648,088 + -0.6 648,088 + +0.1 648,088 + +0.6 648,088 + -0.2 648,089 - +0.2 648,194 - -0.1 648,208 - +0.4 648,210 + -0.4 648,210 + +0.2 648,222 - +1.2 648,222 - +0.0 648,228 + +0.1 648,228 + +0.4 648,229 - -0.2 648,256 + +0.5 648,260 + -0.1 648,260 + +0.2 648,262 + +1.3 648,262 + -1.2 648,262 + +1.0 648,263 - -0.4 648,263 - -0.4 648,263 - +1.0 648,285 + -0.3 648,285 + -0.1 648,285 + +0.1 648,286 - -0.9 648,286 - -0.2 648,306 + +0.8 648,313 + -0.7 648,350 + +0.8 648,447 + -0.0 648,453 + +0.2 649,687 - +1.3 649,687 - -0.1 649,778 - +0.5 649,779 + +0.9 649,780 - +0.2 649,845 + +2.5 649,845 + +0.3 649,845 + -1.3 649,845 + +1.2 649,846 - -0.9 649,911 + -0.6 649,916 + +0.9 649,916 + +0.9 649,917 - -0.8 649,919 + +0.1 649,942 + -0.8 649,942 + -1.6 650,052 + SMc02275 0.10 -1.2 650,339 + SMc02275 0.55 +1.0 650,441 + SMc02275 0.71 +1.1 650,441 + SMc02275 0.71 -0.9 650,441 + SMc02275 0.71 -1.0 650,441 + SMc02275 0.71 -0.1 650,620 + +1.4 650,620 + +0.3 650,620 + +1.7 650,674 + +0.4
Or see this region's nucleotide sequence