Strain Fitness in Sinorhizobium meliloti 1021 around SMc02255

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02254 and SMc02255 overlap by 11 nucleotidesSMc02255 and SMc02256 are separated by 138 nucleotides SMc02254: SMc02254 - quinol oxidase subunit II transmembrane protein, at 618,694 to 619,698 SMc02254 SMc02255: SMc02255 - quinol oxidase subunit I transmembrane protein, at 619,688 to 621,169 SMc02255 SMc02256: SMc02256 - hippurate hydrolase, at 621,308 to 622,489 SMc02256 Position (kb) 619 620 621 622Strain fitness (log2 ratio) -1 0 1 2at 618.701 kb on + strandat 618.747 kb on - strandat 619.640 kb on + strandat 619.781 kb on - strandat 619.816 kb on - strandat 619.816 kb on - strandat 620.869 kb on - strand, within SMc02255at 621.325 kb on - strandat 621.469 kb on + strand, within SMc02256at 621.469 kb on + strand, within SMc02256at 621.469 kb on + strand, within SMc02256at 621.471 kb on + strand, within SMc02256at 621.471 kb on + strand, within SMc02256at 621.471 kb on + strand, within SMc02256at 621.472 kb on - strand, within SMc02256at 621.472 kb on - strand, within SMc02256at 621.472 kb on - strand, within SMc02256at 621.594 kb on + strand, within SMc02256at 621.606 kb on + strand, within SMc02256at 621.707 kb on + strand, within SMc02256at 621.708 kb on - strand, within SMc02256

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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618,701 + +0.7
618,747 - -1.0
619,640 + +0.8
619,781 - -0.3
619,816 - +1.8
619,816 - +0.6
620,869 - SMc02255 0.80 +1.8
621,325 - +0.1
621,469 + SMc02256 0.14 -0.4
621,469 + SMc02256 0.14 +1.3
621,469 + SMc02256 0.14 -0.4
621,471 + SMc02256 0.14 +0.5
621,471 + SMc02256 0.14 -0.0
621,471 + SMc02256 0.14 -0.7
621,472 - SMc02256 0.14 -0.3
621,472 - SMc02256 0.14 -1.0
621,472 - SMc02256 0.14 -0.7
621,594 + SMc02256 0.24 -0.4
621,606 + SMc02256 0.25 -0.5
621,707 + SMc02256 0.34 -0.5
621,708 - SMc02256 0.34 +1.7

Or see this region's nucleotide sequence