Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01606 and SMc01607 overlap by 4 nucleotides SMc01607 and SMc01608 are separated by 4 nucleotides SMc01608 and SMc01609 are separated by 315 nucleotides
SMc01606: SMc01606 - permease, at 2,395,401 to 2,396,207
SMc01606
SMc01607: SMc01607 - permease, at 2,396,204 to 2,396,992
SMc01607
SMc01608: SMc01608 - ABC transporter ATP-binding protein, at 2,396,997 to 2,398,058
SMc01608
SMc01609: SMc01609 - riboflavin synthase subunit beta, at 2,398,374 to 2,398,901
SMc01609
Position (kb)
2396
2397
2398
2399 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2396.070 kb on + strand, within SMc01606 at 2396.071 kb on - strand, within SMc01606 at 2396.100 kb on - strand, within SMc01606 at 2396.167 kb on - strand at 2396.255 kb on + strand at 2396.315 kb on + strand, within SMc01607 at 2396.315 kb on + strand, within SMc01607 at 2396.438 kb on + strand, within SMc01607 at 2396.439 kb on - strand, within SMc01607 at 2396.615 kb on + strand, within SMc01607 at 2396.637 kb on - strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.639 kb on - strand, within SMc01607 at 2396.639 kb on - strand, within SMc01607 at 2396.643 kb on - strand, within SMc01607 at 2396.734 kb on - strand, within SMc01607 at 2396.819 kb on - strand, within SMc01607 at 2396.885 kb on + strand, within SMc01607 at 2396.885 kb on + strand, within SMc01607 at 2396.886 kb on - strand, within SMc01607 at 2397.020 kb on + strand at 2397.056 kb on + strand at 2397.057 kb on - strand at 2397.246 kb on + strand, within SMc01608 at 2397.246 kb on + strand, within SMc01608 at 2397.246 kb on + strand, within SMc01608 at 2397.364 kb on + strand at 2397.364 kb on + strand, within SMc01608 at 2397.391 kb on - strand, within SMc01608 at 2397.559 kb on + strand, within SMc01608 at 2397.660 kb on + strand, within SMc01608 at 2397.661 kb on - strand, within SMc01608 at 2397.661 kb on - strand, within SMc01608 at 2397.896 kb on - strand, within SMc01608 at 2397.965 kb on + strand at 2398.166 kb on + strand at 2398.315 kb on - strand at 2398.315 kb on - strand at 2398.315 kb on - strand at 2398.435 kb on + strand, within SMc01609 at 2398.435 kb on + strand, within SMc01609 at 2398.674 kb on + strand, within SMc01609 at 2398.675 kb on - strand, within SMc01609 at 2398.675 kb on - strand, within SMc01609 at 2398.675 kb on - strand, within SMc01609 at 2398.734 kb on - strand, within SMc01609
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 2,396,070 + SMc01606 0.83 -0.9 2,396,071 - SMc01606 0.83 +0.7 2,396,100 - SMc01606 0.87 -1.4 2,396,167 - +0.1 2,396,255 + -0.9 2,396,315 + SMc01607 0.14 -1.6 2,396,315 + SMc01607 0.14 -0.9 2,396,438 + SMc01607 0.30 -0.5 2,396,439 - SMc01607 0.30 +0.4 2,396,615 + SMc01607 0.52 +1.9 2,396,637 - SMc01607 0.55 -0.5 2,396,638 + SMc01607 0.55 +0.1 2,396,638 + SMc01607 0.55 -1.2 2,396,638 + SMc01607 0.55 -2.6 2,396,638 + SMc01607 0.55 -1.4 2,396,638 + SMc01607 0.55 -1.0 2,396,639 - SMc01607 0.55 -1.0 2,396,639 - SMc01607 0.55 -1.1 2,396,643 - SMc01607 0.56 -0.9 2,396,734 - SMc01607 0.67 +0.2 2,396,819 - SMc01607 0.78 -1.5 2,396,885 + SMc01607 0.86 +1.1 2,396,885 + SMc01607 0.86 -2.0 2,396,886 - SMc01607 0.86 -1.6 2,397,020 + -0.2 2,397,056 + +0.1 2,397,057 - -1.2 2,397,246 + SMc01608 0.23 -2.4 2,397,246 + SMc01608 0.23 -1.1 2,397,246 + SMc01608 0.23 -0.8 2,397,364 + +0.4 2,397,364 + SMc01608 0.35 -1.5 2,397,391 - SMc01608 0.37 -1.1 2,397,559 + SMc01608 0.53 -0.6 2,397,660 + SMc01608 0.62 -0.5 2,397,661 - SMc01608 0.63 -0.6 2,397,661 - SMc01608 0.63 +0.2 2,397,896 - SMc01608 0.85 -1.8 2,397,965 + -1.6 2,398,166 + -0.1 2,398,315 - -0.2 2,398,315 - -0.4 2,398,315 - +0.9 2,398,435 + SMc01609 0.12 -0.4 2,398,435 + SMc01609 0.12 -0.8 2,398,674 + SMc01609 0.57 +0.4 2,398,675 - SMc01609 0.57 -0.4 2,398,675 - SMc01609 0.57 -0.9 2,398,675 - SMc01609 0.57 +2.3 2,398,734 - SMc01609 0.68 -1.3
Or see this region's nucleotide sequence