Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01342 and SMc01341 are separated by 53 nucleotides SMc01341 and SMc01340 are separated by 25 nucleotides SMc01340 and SMc01339 are separated by 92 nucleotides SMc01339 and SMc01338 overlap by 67 nucleotides
SMc01342: SMc01342 - hypothetical protein, at 1,437,489 to 1,438,256
SMc01342
SMc01341: SMc01341 - hypothetical protein, at 1,438,310 to 1,438,459
SMc01341
SMc01340: SMc01340 - aminotransferase, at 1,438,485 to 1,439,642
SMc01340
SMc01339: SMc01339 - transposase ISRM11/ISRM2011-2, at 1,439,735 to 1,440,142
SMc01339
SMc01338: SMc01338 - transposase ISRM11/ISRM2011-2, at 1,440,076 to 1,440,681
SMc01338
Position (kb) 1438
1439
1440 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1437.586 kb on + strand, within SMc01342 at 1437.586 kb on + strand, within SMc01342 at 1437.586 kb on + strand, within SMc01342 at 1437.626 kb on + strand, within SMc01342 at 1437.626 kb on + strand, within SMc01342 at 1437.628 kb on + strand, within SMc01342 at 1437.653 kb on - strand, within SMc01342 at 1437.653 kb on - strand, within SMc01342 at 1437.779 kb on - strand, within SMc01342 at 1437.928 kb on + strand, within SMc01342 at 1437.941 kb on - strand, within SMc01342 at 1437.990 kb on + strand, within SMc01342 at 1437.990 kb on + strand, within SMc01342 at 1437.991 kb on - strand, within SMc01342 at 1438.126 kb on + strand, within SMc01342 at 1438.127 kb on - strand, within SMc01342 at 1438.280 kb on + strand at 1438.280 kb on + strand at 1438.280 kb on + strand at 1438.280 kb on + strand at 1438.281 kb on - strand at 1438.281 kb on - strand at 1438.291 kb on + strand at 1438.368 kb on + strand, within SMc01341 at 1438.369 kb on - strand, within SMc01341 at 1438.369 kb on - strand, within SMc01341 at 1438.369 kb on - strand, within SMc01341 at 1438.460 kb on - strand at 1438.582 kb on + strand at 1438.583 kb on - strand at 1438.673 kb on + strand, within SMc01340 at 1439.106 kb on + strand, within SMc01340 at 1439.107 kb on - strand, within SMc01340 at 1439.117 kb on + strand, within SMc01340 at 1439.117 kb on + strand, within SMc01340 at 1439.191 kb on - strand, within SMc01340 at 1439.193 kb on + strand, within SMc01340 at 1439.194 kb on - strand, within SMc01340 at 1439.198 kb on + strand, within SMc01340 at 1439.278 kb on - strand, within SMc01340 at 1439.279 kb on + strand, within SMc01340 at 1439.279 kb on + strand, within SMc01340 at 1439.280 kb on - strand, within SMc01340 at 1439.280 kb on - strand, within SMc01340 at 1439.280 kb on - strand, within SMc01340 at 1439.362 kb on - strand, within SMc01340 at 1439.362 kb on - strand, within SMc01340 at 1439.442 kb on + strand at 1439.442 kb on + strand, within SMc01340 at 1439.449 kb on - strand, within SMc01340 at 1439.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 1,437,586 + SMc01342 0.13 -1.5 1,437,586 + SMc01342 0.13 +1.0 1,437,586 + SMc01342 0.13 -0.7 1,437,626 + SMc01342 0.18 -1.5 1,437,626 + SMc01342 0.18 -2.4 1,437,628 + SMc01342 0.18 +0.3 1,437,653 - SMc01342 0.21 -0.5 1,437,653 - SMc01342 0.21 -0.9 1,437,779 - SMc01342 0.38 -0.8 1,437,928 + SMc01342 0.57 -1.4 1,437,941 - SMc01342 0.59 -1.3 1,437,990 + SMc01342 0.65 -2.2 1,437,990 + SMc01342 0.65 -2.0 1,437,991 - SMc01342 0.65 -0.8 1,438,126 + SMc01342 0.83 +0.0 1,438,127 - SMc01342 0.83 +0.6 1,438,280 + -2.0 1,438,280 + -3.4 1,438,280 + -1.2 1,438,280 + -1.0 1,438,281 - -0.6 1,438,281 - -0.5 1,438,291 + -0.2 1,438,368 + SMc01341 0.39 +0.7 1,438,369 - SMc01341 0.39 -0.3 1,438,369 - SMc01341 0.39 -1.4 1,438,369 - SMc01341 0.39 -0.6 1,438,460 - +0.2 1,438,582 + -0.4 1,438,583 - +0.1 1,438,673 + SMc01340 0.16 -0.1 1,439,106 + SMc01340 0.54 -0.9 1,439,107 - SMc01340 0.54 +0.1 1,439,117 + SMc01340 0.55 -0.8 1,439,117 + SMc01340 0.55 -0.3 1,439,191 - SMc01340 0.61 -1.3 1,439,193 + SMc01340 0.61 -0.6 1,439,194 - SMc01340 0.61 -0.1 1,439,198 + SMc01340 0.62 +0.6 1,439,278 - SMc01340 0.68 -0.0 1,439,279 + SMc01340 0.69 +0.8 1,439,279 + SMc01340 0.69 +0.0 1,439,280 - SMc01340 0.69 +1.3 1,439,280 - SMc01340 0.69 +1.6 1,439,280 - SMc01340 0.69 -0.6 1,439,362 - SMc01340 0.76 -0.3 1,439,362 - SMc01340 0.76 +0.6 1,439,442 + +1.6 1,439,442 + SMc01340 0.83 -0.9 1,439,449 - SMc01340 0.83 -0.3 1,439,641 - +0.1
Or see this region's nucleotide sequence