Strain Fitness in Sinorhizobium meliloti 1021 around SMc00872

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00928 and SMc00872 are separated by 207 nucleotidesSMc00872 and SMc00871 are separated by 60 nucleotidesSMc00871 and SMc00870 are separated by 84 nucleotides SMc00928: SMc00928 - signal peptide protein, at 915,066 to 916,223 SMc00928 SMc00872: SMc00872 - FOF1 ATP synthase, subunit I transmembrane protein, at 916,431 to 916,877 SMc00872 SMc00871: SMc00871 - F0F1 ATP synthase subunit A, at 916,938 to 917,690 SMc00871 SMc00870: SMc00870 - F0F1 ATP synthase subunit C, at 917,775 to 918,002 SMc00870 Position (kb) 916 917Strain fitness (log2 ratio) -2 -1 0 1 2at 915.670 kb on - strand, within SMc00928at 916.131 kb on + strandat 916.131 kb on + strandat 916.132 kb on - strandat 916.132 kb on - strandat 916.132 kb on - strandat 916.132 kb on - strandat 916.195 kb on - strandat 916.195 kb on - strandat 916.467 kb on + strandat 916.898 kb on + strandat 917.688 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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915,670 - SMc00928 0.52 -2.1
916,131 + -0.6
916,131 + -1.9
916,132 - -1.5
916,132 - -1.9
916,132 - -1.0
916,132 - -0.9
916,195 - -2.1
916,195 - -2.1
916,467 + +1.8
916,898 + -0.2
917,688 + +1.6

Or see this region's nucleotide sequence