Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00859 and SMc00858 overlap by 32 nucleotides SMc00858 and SMc00857 are separated by 138 nucleotides SMc00857 and SMc00856 are separated by 140 nucleotides SMc00856 and SMc00855 are separated by 126 nucleotides
SMc00859: SMc00859 - hypothetical protein, at 928,629 to 928,850
SMc00859
SMc00858: SMc00858 - hypothetical protein, at 928,819 to 929,655
SMc00858
SMc00857: SMc00857 - protease, at 929,794 to 930,660
SMc00857
SMc00856: SMc00856 - hypothetical protein, at 930,801 to 930,992
SMc00856
SMc00855: SMc00855 - glycyl-tRNA synthetase subunit alpha, at 931,119 to 932,054
SMc00855
Position (kb) 929
930
931 Strain fitness (log2 ratio) -2
-1
0
1 at 929.471 kb on + strand, within SMc00858 at 929.642 kb on - strand at 929.664 kb on - strand at 929.696 kb on + strand at 929.696 kb on + strand at 929.697 kb on - strand at 929.697 kb on - strand at 929.764 kb on - strand at 930.024 kb on + strand, within SMc00857 at 930.024 kb on + strand, within SMc00857 at 930.024 kb on + strand, within SMc00857 at 930.028 kb on + strand, within SMc00857 at 930.109 kb on + strand, within SMc00857 at 930.109 kb on + strand, within SMc00857 at 930.110 kb on - strand, within SMc00857 at 930.110 kb on - strand, within SMc00857 at 930.238 kb on + strand, within SMc00857 at 930.967 kb on - strand, within SMc00856
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 929,471 + SMc00858 0.78 +0.3 929,642 - +0.2 929,664 - +0.8 929,696 + -1.0 929,696 + -0.7 929,697 - +0.6 929,697 - -1.2 929,764 - +0.4 930,024 + SMc00857 0.27 -1.8 930,024 + SMc00857 0.27 +1.5 930,024 + SMc00857 0.27 +0.7 930,028 + SMc00857 0.27 +0.7 930,109 + SMc00857 0.36 +0.2 930,109 + SMc00857 0.36 -0.3 930,110 - SMc00857 0.36 +0.8 930,110 - SMc00857 0.36 +0.8 930,238 + SMc00857 0.51 +0.4 930,967 - SMc00856 0.86 -1.4
Or see this region's nucleotide sequence