Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00785 and SMc00786 are separated by 477 nucleotides SMc00786 and SMc00787 are separated by 103 nucleotides
SMc00785: SMc00785 - iron-responsive transcriptional regulator, at 806,545 to 807,009
SMc00785
SMc00786: SMc00786 - periplasmic dipeptide-binding protein, at 807,487 to 809,082
SMc00786
SMc00787: SMc00787 - peptide ABC transporter permease, at 809,186 to 810,190
SMc00787
Position (kb) 807
808
809
810 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 807.041 kb on - strand at 807.138 kb on + strand at 807.379 kb on + strand at 807.380 kb on - strand at 807.380 kb on - strand at 807.428 kb on - strand at 807.428 kb on - strand at 807.448 kb on + strand at 807.448 kb on + strand at 807.501 kb on + strand at 807.502 kb on - strand at 807.610 kb on + strand at 807.611 kb on - strand at 807.611 kb on - strand at 807.611 kb on - strand at 807.612 kb on + strand at 807.653 kb on - strand, within SMc00786 at 807.742 kb on + strand, within SMc00786 at 807.742 kb on + strand, within SMc00786 at 807.742 kb on + strand, within SMc00786 at 807.743 kb on - strand, within SMc00786 at 807.743 kb on - strand, within SMc00786 at 807.744 kb on + strand, within SMc00786 at 807.744 kb on + strand, within SMc00786 at 807.745 kb on - strand, within SMc00786 at 807.745 kb on - strand, within SMc00786 at 807.745 kb on - strand, within SMc00786 at 807.874 kb on + strand, within SMc00786 at 807.875 kb on - strand, within SMc00786 at 807.879 kb on - strand, within SMc00786 at 808.042 kb on + strand, within SMc00786 at 808.042 kb on + strand, within SMc00786 at 808.042 kb on + strand, within SMc00786 at 808.042 kb on + strand, within SMc00786 at 808.127 kb on - strand, within SMc00786 at 808.322 kb on - strand, within SMc00786 at 808.354 kb on + strand, within SMc00786 at 808.354 kb on + strand, within SMc00786 at 808.354 kb on + strand, within SMc00786 at 808.364 kb on - strand, within SMc00786 at 808.364 kb on - strand, within SMc00786 at 808.507 kb on + strand, within SMc00786 at 808.510 kb on - strand, within SMc00786 at 808.520 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.534 kb on + strand, within SMc00786 at 808.624 kb on + strand, within SMc00786 at 808.625 kb on - strand, within SMc00786 at 808.706 kb on - strand, within SMc00786 at 808.706 kb on - strand, within SMc00786 at 808.720 kb on + strand, within SMc00786 at 808.930 kb on + strand at 808.930 kb on + strand at 808.931 kb on - strand at 809.070 kb on + strand at 809.075 kb on + strand at 809.075 kb on + strand at 809.075 kb on + strand at 809.076 kb on - strand at 809.076 kb on - strand at 809.080 kb on + strand at 809.080 kb on + strand at 809.081 kb on - strand at 809.081 kb on - strand at 809.087 kb on - strand at 809.156 kb on - strand at 809.185 kb on + strand at 809.185 kb on + strand at 809.185 kb on + strand at 809.185 kb on + strand at 809.186 kb on - strand at 809.381 kb on + strand, within SMc00787 at 809.381 kb on + strand, within SMc00787 at 809.390 kb on + strand, within SMc00787 at 809.745 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.883 kb on - strand, within SMc00787 at 809.883 kb on - strand, within SMc00787
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 807,041 - +0.3 807,138 + -0.4 807,379 + -0.9 807,380 - -0.3 807,380 - +1.4 807,428 - +1.2 807,428 - +1.4 807,448 + -1.1 807,448 + -1.2 807,501 + +1.4 807,502 - -0.2 807,610 + +1.6 807,611 - +1.2 807,611 - +1.1 807,611 - +1.0 807,612 + +1.5 807,653 - SMc00786 0.10 +2.4 807,742 + SMc00786 0.16 +1.4 807,742 + SMc00786 0.16 -0.2 807,742 + SMc00786 0.16 +2.0 807,743 - SMc00786 0.16 +1.8 807,743 - SMc00786 0.16 +1.1 807,744 + SMc00786 0.16 +1.4 807,744 + SMc00786 0.16 +0.9 807,745 - SMc00786 0.16 +0.8 807,745 - SMc00786 0.16 +1.1 807,745 - SMc00786 0.16 +1.7 807,874 + SMc00786 0.24 +1.2 807,875 - SMc00786 0.24 +2.0 807,879 - SMc00786 0.25 +1.5 808,042 + SMc00786 0.35 +1.4 808,042 + SMc00786 0.35 -0.4 808,042 + SMc00786 0.35 -1.5 808,042 + SMc00786 0.35 +1.2 808,127 - SMc00786 0.40 +1.4 808,322 - SMc00786 0.52 +1.6 808,354 + SMc00786 0.54 +1.3 808,354 + SMc00786 0.54 +2.4 808,354 + SMc00786 0.54 +1.3 808,364 - SMc00786 0.55 +1.1 808,364 - SMc00786 0.55 +1.1 808,507 + SMc00786 0.64 +2.4 808,510 - SMc00786 0.64 +1.6 808,520 + SMc00786 0.65 +1.9 808,534 + SMc00786 0.66 +2.4 808,534 + SMc00786 0.66 +0.1 808,534 + SMc00786 0.66 +0.6 808,534 + SMc00786 0.66 +1.7 808,534 + SMc00786 0.66 +3.8 808,534 + SMc00786 0.66 +1.3 808,624 + SMc00786 0.71 +1.7 808,625 - SMc00786 0.71 +1.4 808,706 - SMc00786 0.76 +0.7 808,706 - SMc00786 0.76 +1.3 808,720 + SMc00786 0.77 +0.9 808,930 + +1.2 808,930 + +0.8 808,931 - +0.5 809,070 + +1.0 809,075 + +1.2 809,075 + +0.4 809,075 + -2.1 809,076 - +1.3 809,076 - +0.8 809,080 + -0.4 809,080 + +0.4 809,081 - +1.3 809,081 - -1.2 809,087 - +0.4 809,156 - +1.1 809,185 + +1.5 809,185 + +0.7 809,185 + +0.8 809,185 + +0.7 809,186 - +1.2 809,381 + SMc00787 0.19 +1.3 809,381 + SMc00787 0.19 +1.5 809,390 + SMc00787 0.20 +0.7 809,745 + SMc00787 0.56 +1.5 809,882 + SMc00787 0.69 +2.0 809,882 + SMc00787 0.69 +2.8 809,882 + SMc00787 0.69 +1.2 809,882 + SMc00787 0.69 +0.5 809,883 - SMc00787 0.69 +0.8 809,883 - SMc00787 0.69 +1.0
Or see this region's nucleotide sequence