Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00841 and SMc00778 are separated by 215 nucleotides SMc00778 and SMc00779 are separated by 11 nucleotides SMc00779 and SMc00780 are separated by 71 nucleotides
SMc00841: SMc00841 - tRNA-His, at 797,938 to 798,014
SMc00841
SMc00778: SMc00778 - oxidoreductase, at 798,230 to 798,997
SMc00778
SMc00779: SMc00779 - FAD-dependent oxidoreductase, at 799,009 to 800,247
SMc00779
SMc00780: SMc00780 - transcriptional regulator, at 800,319 to 801,200
SMc00780
Position (kb) 799
800
801 Strain fitness (log2 ratio) -2
-1
0
1 at 798.057 kb on - strand at 798.080 kb on + strand at 798.132 kb on + strand at 798.132 kb on + strand at 798.132 kb on + strand at 798.133 kb on - strand at 798.133 kb on - strand at 798.133 kb on - strand at 798.133 kb on - strand at 798.210 kb on + strand at 798.210 kb on + strand at 798.263 kb on - strand at 798.263 kb on - strand at 798.441 kb on + strand, within SMc00778 at 798.442 kb on - strand, within SMc00778 at 798.695 kb on + strand, within SMc00778 at 798.696 kb on - strand, within SMc00778 at 798.722 kb on - strand, within SMc00778 at 798.722 kb on - strand, within SMc00778 at 798.722 kb on - strand, within SMc00778 at 798.923 kb on + strand at 798.923 kb on + strand at 798.924 kb on - strand at 799.058 kb on - strand at 799.072 kb on + strand at 799.073 kb on - strand at 799.261 kb on - strand, within SMc00779 at 799.266 kb on - strand, within SMc00779 at 799.372 kb on - strand, within SMc00779 at 799.442 kb on + strand, within SMc00779 at 799.564 kb on + strand, within SMc00779 at 799.564 kb on + strand, within SMc00779 at 799.565 kb on - strand, within SMc00779 at 799.565 kb on - strand, within SMc00779 at 799.565 kb on - strand, within SMc00779 at 799.565 kb on - strand, within SMc00779 at 799.565 kb on - strand, within SMc00779 at 799.566 kb on + strand, within SMc00779 at 799.567 kb on - strand, within SMc00779 at 799.690 kb on + strand, within SMc00779 at 799.691 kb on - strand, within SMc00779 at 799.692 kb on - strand, within SMc00779 at 799.810 kb on + strand, within SMc00779 at 799.811 kb on - strand, within SMc00779 at 799.826 kb on - strand, within SMc00779 at 799.826 kb on - strand, within SMc00779 at 799.837 kb on + strand, within SMc00779 at 799.837 kb on + strand, within SMc00779 at 799.838 kb on - strand, within SMc00779 at 799.838 kb on - strand, within SMc00779 at 799.932 kb on + strand, within SMc00779 at 799.932 kb on + strand, within SMc00779 at 799.933 kb on - strand at 799.945 kb on + strand, within SMc00779 at 800.050 kb on + strand, within SMc00779 at 800.155 kb on + strand at 800.410 kb on + strand, within SMc00780 at 800.410 kb on + strand, within SMc00780 at 800.411 kb on - strand, within SMc00780 at 800.457 kb on + strand, within SMc00780 at 800.458 kb on - strand, within SMc00780 at 800.458 kb on - strand, within SMc00780 at 800.483 kb on + strand, within SMc00780 at 800.483 kb on + strand, within SMc00780 at 800.485 kb on + strand, within SMc00780 at 800.486 kb on - strand, within SMc00780 at 800.486 kb on - strand, within SMc00780 at 800.630 kb on - strand, within SMc00780 at 800.693 kb on - strand, within SMc00780 at 800.720 kb on + strand, within SMc00780 at 800.720 kb on + strand, within SMc00780 at 800.720 kb on + strand, within SMc00780 at 800.721 kb on - strand, within SMc00780 at 800.721 kb on - strand, within SMc00780 at 800.721 kb on - strand, within SMc00780 at 800.721 kb on - strand, within SMc00780 at 800.722 kb on + strand, within SMc00780 at 800.723 kb on - strand, within SMc00780 at 800.723 kb on - strand, within SMc00780 at 801.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 798,057 - -0.2 798,080 + -0.9 798,132 + +0.1 798,132 + +0.0 798,132 + -0.0 798,133 - -1.6 798,133 - -0.8 798,133 - -1.3 798,133 - -0.2 798,210 + +0.1 798,210 + -0.1 798,263 - +0.1 798,263 - +0.3 798,441 + SMc00778 0.27 -0.2 798,442 - SMc00778 0.28 -0.5 798,695 + SMc00778 0.61 -0.3 798,696 - SMc00778 0.61 +0.6 798,722 - SMc00778 0.64 -0.8 798,722 - SMc00778 0.64 +0.1 798,722 - SMc00778 0.64 -0.4 798,923 + +1.1 798,923 + +0.2 798,924 - -1.6 799,058 - +0.4 799,072 + -2.3 799,073 - -0.4 799,261 - SMc00779 0.20 -0.2 799,266 - SMc00779 0.21 +0.5 799,372 - SMc00779 0.29 -2.0 799,442 + SMc00779 0.35 +0.1 799,564 + SMc00779 0.45 -0.3 799,564 + SMc00779 0.45 -0.9 799,565 - SMc00779 0.45 -0.9 799,565 - SMc00779 0.45 +0.7 799,565 - SMc00779 0.45 -1.2 799,565 - SMc00779 0.45 +0.2 799,565 - SMc00779 0.45 -0.4 799,566 + SMc00779 0.45 -1.4 799,567 - SMc00779 0.45 -1.2 799,690 + SMc00779 0.55 +1.0 799,691 - SMc00779 0.55 -0.3 799,692 - SMc00779 0.55 -1.0 799,810 + SMc00779 0.65 +0.5 799,811 - SMc00779 0.65 -0.6 799,826 - SMc00779 0.66 -0.5 799,826 - SMc00779 0.66 -1.5 799,837 + SMc00779 0.67 -1.3 799,837 + SMc00779 0.67 +0.2 799,838 - SMc00779 0.67 -0.4 799,838 - SMc00779 0.67 +1.5 799,932 + SMc00779 0.74 +0.7 799,932 + SMc00779 0.74 +0.1 799,933 - +0.8 799,945 + SMc00779 0.76 +0.2 800,050 + SMc00779 0.84 -2.1 800,155 + -0.1 800,410 + SMc00780 0.10 -0.5 800,410 + SMc00780 0.10 +0.8 800,411 - SMc00780 0.10 -0.7 800,457 + SMc00780 0.16 -0.4 800,458 - SMc00780 0.16 -0.1 800,458 - SMc00780 0.16 -0.1 800,483 + SMc00780 0.19 -0.4 800,483 + SMc00780 0.19 -1.0 800,485 + SMc00780 0.19 -0.9 800,486 - SMc00780 0.19 -1.5 800,486 - SMc00780 0.19 +0.1 800,630 - SMc00780 0.35 +0.5 800,693 - SMc00780 0.42 +0.7 800,720 + SMc00780 0.45 -1.2 800,720 + SMc00780 0.45 -0.0 800,720 + SMc00780 0.45 +0.8 800,721 - SMc00780 0.46 -0.0 800,721 - SMc00780 0.46 +0.6 800,721 - SMc00780 0.46 -1.1 800,721 - SMc00780 0.46 +0.2 800,722 + SMc00780 0.46 +0.2 800,723 - SMc00780 0.46 +0.3 800,723 - SMc00780 0.46 +0.5 801,178 - -0.5
Or see this region's nucleotide sequence